Clupea harengus (Atlantic herring): 105898220
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Entry
105898220 CDS
T09045
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03030
DNA replication
char03420
Nucleotide excision repair
char03430
Mismatch repair
char03440
Homologous recombination
char03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
105898220 (rpa1)
03420 Nucleotide excision repair
105898220 (rpa1)
03430 Mismatch repair
105898220 (rpa1)
03440 Homologous recombination
105898220 (rpa1)
03460 Fanconi anemia pathway
105898220 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105898220 (rpa1)
03032 DNA replication proteins [BR:
char03032
]
105898220 (rpa1)
03400 DNA repair and recombination proteins [BR:
char03400
]
105898220 (rpa1)
Transcription factors [BR:
char03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
105898220 (rpa1)
DNA replication proteins [BR:
char03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
105898220 (rpa1)
DNA repair and recombination proteins [BR:
char03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
105898220 (rpa1)
MMR (mismatch excision repair)
105898220 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
105898220 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
A_deaminase
RADX
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
105898220
NCBI-ProteinID:
XP_012680693
Ensembl:
ENSCHAG00000007222
UniProt:
A0A6P3VUK1
LinkDB
All DBs
Position
9:7232314..7261990
Genome browser
AA seq
603 aa
AA seq
DB search
MAVVLSDGAIEALTKGQDVNNPMLQLVNIRKIDGGNGPVRFRLMMSDGQHTMSSFMLSTQ
LNPLAEENQLAPNCVCMLKRSVTNVLKDGRRVVVVLDMEVVKSAEEVGGKIGEPTPYVEG
QAKAPQSAVPNPSVRPLQPQNGSDGMAKGSAKPAFGKKPLVAPSTPGGTSKVAPIASLNP
YQSKWTIRARVTNKSGIRTWSNSRGEGKLFSMDLVDESGEIRVTAFTQEVDKFYSLVEQG
KVYYISKGSLKMANKQYSTLKNDYEMTLNGDSTVIPCDDSSDVPTLQYSFVPIGDLEAHE
KDAIVDVIGVVKTVEDLARITTKNSREVSKRNIHLMDMSGRVISLTMWGAEAETFDGSGQ
PIMAIKGARLSDFGGRSLSTLFSSVVMMNPDLPEAYKLRGWYDKEGHAMDGQSMTELRGG
GGGGGNTNWKTLADVKTEHLGHGEKPDYFSCIGTVVHLRKENCMYQACPSADCNKKVVDQ
QNGMYRCEKCDKEFPEFKYRLMLSANIADFGDNQWVTCFQDTAEAILGQNSAYVGQLKDS
NEAAFDEIFQQANFNTFVLRNRVKLETYNDESRIKVTVMDAKPVDHKEYSKRLIMSIRKL
ATQ
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggctgttgttctgtcagatggagccatagaggctctaactaaaggccaagatgtcaac
aacccaatgttgcagttggtgaatattcgcaaaattgatggagggaatggcccagttcga
ttccggctcatgatgagtgacggacaacacactatgtcctctttcatgctctccacccag
ctcaaccctctggcagaagagaatcagctggcacccaactgtgtgtgcatgctgaagagg
agtgtgacaaacgtacttaaagatggacgacgtgttgtggtggtcctagacatggaagtc
gtgaaatcggcagaggaggttggcggtaaaattggtgaacccacaccctatgttgaaggt
caggcaaaggccccacagtccgcagtgcccaacccctctgtccgccccttgcagccccag
aatggaagtgatggtatggccaagggctcagccaaaccagcatttggcaaaaagccccta
gttgcccccagtacaccaggaggcacatccaaagttgcccccatcgccagcctgaatcca
tatcagtccaagtggactattcgagctcgcgttactaacaagagtggtatccgcacatgg
agtaactcgcggggtgaaggaaagttgttctccatggacctggtggatgaaagtggagag
atcagagtgactgcgttcactcaggaggtggacaaattctactcgctggttgagcagggc
aaggtctactacatctccaaaggctcgctgaagatggccaacaagcagtactccaccctg
aagaacgattatgagatgacactgaacggagactccacggtcatcccctgcgatgacagc
agcgacgtgcccacccttcagtacagcttcgtgcccatcggagacctggaggcccatgag
aaggatgccatcgtggacgtgatcggcgtggtcaagactgtggaggacctggcgcgcatc
accaccaaaaacagccgcgaggtgtccaagaggaacatccacctgatggacatgtctgga
cgagtcatctccctcaccatgtggggggctgaggcagagactttcgatggctccgggcag
cccatcatggccatcaaaggggcccgtctctcagacttcggcggccgctctctcagtacc
ctgttcagcagcgtggtcatgatgaatccagacctgccggaggcttacaagctgcgtggc
tggtatgataaggagggccatgcgatggatgggcagtccatgacggagctgcggggaggg
ggcggaggtggaggcaacaccaactggaagaccctggcagatgtcaagaccgagcaccta
ggtcacggagagaagcctgactacttcagctgcattgggacggtggtgcacctgcgcaag
gagaactgcatgtaccaggcctgccccagcgcggactgcaacaagaaggtggtggaccag
cagaatggcatgtaccgctgcgagaagtgcgacaaggagttccctgagttcaagtaccgc
ctcatgctgtcggccaacatcgctgactttggggataaccagtgggtgacgtgctttcaa
gacacagcagaagccattctgggccagaactctgcatacgttgggcagctcaaggactcg
aatgaggcagcttttgatgagatcttccagcaagccaacttcaacacctttgtcctccgc
aaccgagtgaagctggaaacatacaatgatgagtcacgcatcaaggtgaccgtgatggac
gccaagcctgtggaccacaaggagtacagcaagcggctgatcatgagcatcaggaagctg
gctacccagtag
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