Clupea harengus (Atlantic herring): 105898227
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Entry
105898227 CDS
T09045
Symbol
vps53
Name
(RefSeq) vacuolar protein sorting-associated protein 53 homolog
KO
K20299
vacuolar protein sorting-associated protein 53
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105898227 (vps53)
Membrane trafficking [BR:
char04131
]
Protein recycling
Others
EARP complex
105898227 (vps53)
Endosome - Golgi transport
Tethering complex
GARP complex
105898227 (vps53)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps53_N
VPS53_C
Vps54_N
COG4_N
Sec8_N
FBF1
GrpE
COG5_N
Laminin_II
NBD94
Syndetin_C
COG3_N
VPS51_Exo84_N
XhlA
FUSC
Med11
Motif
Other DBs
NCBI-GeneID:
105898227
NCBI-ProteinID:
XP_012680701
Ensembl:
ENSCHAG00000001578
UniProt:
A0A6P3VUK6
LinkDB
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Position
9:complement(6870809..6898834)
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AA seq
833 aa
AA seq
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MSVMEEDELEFAEDLEAILHLSPEVQLAIEQVFPSQDPLDRPDFNAVEYINTLFPTEQSL
ANIDDVVNKIRLKIRRLDDNIRTVVRGQTNVGQDGRQALEEAQTAIQQLFGKIKDIKDKA
EKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRKRQYGEVANLL
QGVVNVLEHFQKYMGIPQIRQLSERVKAAQSELGTQILADFEEAFPSQGSKRPGGPSMVL
KDACLVASVLDHRIKQEIIKKFIRQHLSEYLVLFQENQDVAWLDKIDRRYAWIKRQLVDY
EEKYGRMFPEEWCMTERIAVEFCHITRIELAKLMRARAREIEVKLLLFAIQRTTNFEGLL
AKRFSGCTLSDVPGKRPEPPLAPTNPFLEDETGEDTASEKDEDLDKPKKPKAPDNPFHGI
VSKCFEPHLYVYIESQDKNLGELIDRFVADFRAQGPPKSATEDGGAVLPSCADLFVYYKK
CMVQCSQLSTGEPMIALSTIFQKYLREYAWKILSGNLPKTSSGNSGGLTISSLLKEKEGS
EVAKFTVEELCLICSILSTAEYCLATTQQLEEKLKEKVDMTLMERINLSGEMDTFSTVIS
NSIQLLVQDLDAACDPALTAMSKMPWQSVEHVGDQSPYVTSVIMHIKQNVPIIRDNLAAT
RKYFTQFCIKFTNSFIPKFINHLFRCKPISMVGAEQLLLDTHSLKTVLLDLPSIGSQVVR
KAPASYTKIVVKGMTRAEMILKVIMAPHEPPVVFVDNYIKLLADGNPETFQKILDMKGLK
RSEQSSMIELFRQRLPTPPSGSEGTPSLSFSAPTPEQESSRIRKLEKLIKKRL
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgtcagttatggaagaagacgagctggaatttgccgaggatttggaggcaattttacac
ctctcaccagaagtgcaactggccattgaacaggtttttccgagccaagatccactggac
agaccggacttcaatgctgtggaatacatcaatacgttattccccacagagcagtcattg
gctaacatagatgatgtcgtgaacaagatccgcctgaaaatcaggcgactggatgataac
atcaggaccgtggtgagaggacagacaaacgtgggccaggatggtcggcaggcactggag
gaggcgcagacagccatccagcagctttttggcaaaatcaaggacatcaaggacaaggcg
gagaagtcggagcaaatggtcaaggagatcacccgcgacatcaaacagctggaccatgcc
aagcgccacctgaccacctccatcaccacgctcaaccacctgcacatgctggccggaggg
gtggactcactcgaggccatgacgcgcaagaggcagtatggagaggtggctaatctacta
cagggtgtagtaaacgtgctggagcacttccagaagtacatgggcatccctcagatccgc
cagctctcggagagagtcaaagctgcacagagcgagctcggcacgcagatcctggccgac
ttcgaggaggcctttccttcacagggctccaagagacctggaggccccagcatggtcctc
aaagacgcctgtctggtggccagcgttctggatcaccgcatcaagcaggagatcataaag
aagtttatccggcagcacctctccgagtacctcgtgctctttcaggagaaccaggatgtg
gcgtggttagacaaaattgaccggcgctacgcctggatcaagcggcagctggtggactat
gaggagaagtacggccgcatgtttccagaggagtggtgcatgacggagcgcatcgctgtg
gagttctgccacatcaccaggatcgagctggccaagctgatgcgagctcgggccagggag
attgaggtcaaactgctgctcttcgccatccagaggaccacgaacttcgagggactgctg
gccaagaggttctcgggctgcaccttgagcgacgttcccgggaagaggcctgaacccccc
ctggctcccaccaaccctttcctggaggacgagacaggggaggacacggcgtcagagaag
gatgaggatttggacaagcctaagaaacccaaggccccagataacccgttccacggcatc
gtctccaagtgtttcgagccccatctttacgtctacattgaatcgcaggacaagaacctc
ggggagctgattgaccgcttcgtggcggacttcagggcccagggaccgcccaagtcggcc
acagaggacgggggcgcggtgctgcccagctgcgccgacctctttgtctactacaagaag
tgcatggtgcagtgctcgcagctcagcacgggcgagcccatgatcgccctcagcaccatc
tttcaaaagtacctgcgcgagtacgcctggaagatcctctcagggaaccttcccaagacc
agcagcggtaacagcgggggtctgaccatcagcagcctgctgaaggagaaggagggctct
gaggtggccaagttcaccgtcgaggagctctgcctcatctgcagcatcctcagcacagcc
gagtactgcctagctaccacccaacagctggaggagaagctgaaggagaaggtggacatg
accctgatggagaggatcaacctgtctggcgagatggacaccttcagcacggtgatctcc
aacagcatccagctcttggtccaggatctggatgcggcctgcgaccctgctctgacagcc
atgagtaaaatgccttggcagagcgtggagcacgtaggagaccagagcccctacgtgacc
tccgtcatcatgcacatcaaacagaacgtccccatcattagggacaacctggccgccacc
cgcaaatactttacgcagttctgcattaaatttaccaactctttcatccccaagttcatt
aaccacctcttcagatgtaaacctatcagcatggtgggagcagaacagctcctgctggac
acgcactccctgaaaacagttctgctggacttgccttccatcgggtcacaggtggtccgg
aaggctccggcgagctacaccaagattgtcgtcaaggggatgacccgagcagaaatgatt
ctgaaggtcatcatggctcctcacgagccgcccgtggtcttcgtcgataactacatcaag
ctccttgctgacgggaacccggagactttccagaagattcttgacatgaagggcctgaag
cgcagtgagcagagcagcatgattgagctcttcagacagaggttacccacccccccctcg
ggcagcgagggcacgccctccctctctttcagtgcgcccaccccggagcaggagtcctcc
cgcatccgcaagctggagaagcttatcaaaaagagactgtga
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