Clupea harengus (Atlantic herring): 105898242
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Entry
105898242 CDS
T09045
Name
(RefSeq) voltage-dependent R-type calcium channel subunit alpha-1E isoform X1
KO
K04852
voltage-dependent calcium channel R type alpha-1E
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04010
MAPK signaling pathway
char04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
105898242
04020 Calcium signaling pathway
105898242
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
char04040
]
105898242
Ion channels [BR:
char04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
105898242
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
105898242
NCBI-ProteinID:
XP_031431360
UniProt:
A0A6P8G7X3
LinkDB
All DBs
Position
10:14641760..14772327
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AA seq
2492 aa
AA seq
DB search
MLELGAGSVSAQATLSDHRHGNIPPPPLAAVRAGACPGVGGVPAPRCYVLPPEDSETWHK
HRSGFGLAGSGMGMGLVMGLSSSRSGSLLEPPSLAESLLSRSSSRETLYIPRGATLPTSL
ELVAVAALEGVGGSAPPCLDPTMPISPNVIKRRRGGLIEQRDIIKAHQAHKIQSTPQARR
KEWEMARFGDDVPGLLGPGDGGSERNRSRDGAAVSTGGISPAFKQTKAQRARTMALYNPI
PVRQNCFTVNRSLFIFGEDNVVRKYAKKIIEWPPFEYMILATIIANCIVLALEQHLPGDD
KTPMSKKLEKTEPYFIGMFCFEAGIKLVALGFVFHKGSYLRNGWNVMDFIVVLSGILATA
GAHMNIPVDLRTLRAVRVLRPLKLVSGIPSLQIVLKSIMKAMVPLLQIGLLLFFAILMFA
IIGLEFYSGKLHSNCVALPGILDNETLVSSEVEFPCGFRKCPPGYTCSDFTWIGPNDGIT
QFDNILFALLTVFQCITMEGWTTVLYNTNDALNPTWNWLYFIPLIIIGSFFVLNLVLGVL
SGEFAKERERVENRRAFMKLRRQQQIERELNGYRAWIDRAEEVMLAEENKNSGPSALDAP
DTLSEWETDSNHVLKRATIKKRGEAIHRRPGDDQYTDISSVGMPLNRASIRSAKRGPTAY
FRRKERMLRISVRRMVKTHTFYWTVLGLVALNTLCVAIVHHDQPEWLSTFLYYAEFLFLG
LFLTEMFLKMYGMGPRLYFHSSFNRFDFGVIVGSILEVLWGFIRPGMSFGISVLRALRLL
RIFKITKYWASLRNLVVSLMNSMKSIISLLFLLFLFIVVFALLGMQLFGGRFIFEDYTPT
NFDTFPAAIMTVFQILTGEDWNEVMYDGIRSQGGVKSGMWSSIYFIVLTLFGNYTLLNVF
LAIAVDNLANAQELTKDEEEEEAAFNQKHALQKAKEVGPMSSIMSSDRRRRPYLYRRRAI
HRSHPAYSLEEAERFAESVRAPSFNSSTSFMSRRERRRRLTMSVWEQRTSQLRRHRQMSS
REVLCSGKPGEENNHELNCKPTLSPTDGSCRLPNPVIAPTPDATAAVPGDATTTAILPMD
LTLSGNPLTLPEPPLSLPEPPLVMDLPLPEPPLVADVPSPEATSATEAKQGVTNHWHQPL
GARRLNGERRQRAVRKFRPPTGDTLTPDMGVRPRRPRHREARNEEPGGRDSQEECSRSVS
RERGASDTAEEENHEGGGAGQRETSGNEQSRHNDPEFSAFPDLLSTTPESCSPNTRRMEE
SSQDDPPTLQLSDDPAPDPSDGSKGGGEGGVNLDPSSLGSEKSPLSGSVVIEVTDLQTSS
LELTSMSGNTKDVEAAVRSEKEEEEEASNPPRAEPSNSMFLFKPTNPVRRACHYIVNLRY
FEMSILLVIAASSIALAAEDPVATNSDWNKVLRYFDYVFTGVFTFEMIIKMIDQGLILHD
GSYFRDLWNILDFIVVIGALVAFALTNVMGNNKGRDIKTIKSLRVLRVLRPLKTIKRLPK
LKAVFDCVVNSLKNVFNILIVYKLFMFIFAVIAVQLFKGKFFYCTDSSKDTEKDCQGYYI
DYEKYKKEVKKREWRRHDFHYDNVVWALLTLFTVSTGEGWPQVLQHSVDVTEEDRGPSRG
NRMEMSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKMMEECSLEKNERACIDFAIGAK
PLTRYMPQNRQTFQYRLWHFVVSPSFEYTVLAMIALNTIVLMMKYYSAPPAYDTVLKHLN
TAFTVLFSVECVLKIMAFGFLNYFRDTWNIFDFITVLGSITEIVVVDLQSGAVNMSFLKL
FRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIFAIIGMQVFGNIKLDEK
THINQHNNFKTFFGALMLLFRSATGESWQEIMLSCLGGQDCEQDLSISTPALATEHKGGC
GTDFAYFYFVAFIFFSSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEFVRIWGEYDRA
ACGRIHYNDMYEMLTHMSPPLGLGKKCPSKVAYKRLVLMNMPVDEEMAVHFTSTLMALIR
TALEVKIARGGEDRIQMDMDLQKEISVIWPNLSQKALDLLVPIHKAGDMTIGKIYAAMMI
MDYYKQSKAKKLRQQLEDQKHAPMFQRMDASSLPQDILSNAKALPFLAHSTGSALGGFAA
LSPMSPQELFMPPVPCHDEEEEEEEPYHHHYHGHHLHTMVSTESTLMKRSFSTIGDQCVN
DLWQEEYSLERISPDQLHRPRQRSFRGVRSNLKEQLDKERGRSKERRHLLSPDVSRCNSE
ERSQHPSQERKQSRSPSEGRARSPLKQGINSASSNLSTSENSTPRSRRQLPQTPSRPRPH
ISYSPLVCRAPLPPPASTEALPRTQTEAEAEEPRLGVGLGPTLGPTLGPSPAPGLAALSA
GALHSSPQRYISEPYLALHEELHSLEAAGPEETLTFETAIATSLGRANAISSAPQLRHSW
QVPNGHFRKRLGQASSSAACDLLSDTDEDDRC
NT seq
7479 nt
NT seq
+upstream
nt +downstream
nt
atgctggaactcggcgcgggttcggtcagcgcgcaggccaccctatctgaccatcgccat
ggaaacatcccccctccacctctggctgctgtccgggcgggcgcatgcccgggcgtcggc
ggagtcccggcacctcgctgctacgtcctgccgcccgaggactccgagacctggcacaag
caccgcagcggcttcggactggcgggctcagggatggggatggggctggtgatgggtctg
tcgtcgtcccgctctggctcgctgctggagccccccagcctggcggagagcctgttgtcg
cgcagcagcagccgtgagacgctctacatcccacggggtgccacgctgcccacctccctg
gagctggtggcggtggctgccctggagggcgtgggcggatccgcgccgccttgcctggac
cccaccatgcccatcagccccaacgtcattaagcggaggcgggggggcctgatcgagcag
cgggacatcattaaggcgcaccaagcacacaagattcagagcaccccgcaggcccggcgt
aaggagtgggaaatggcccgctttggtgatgatgtccccgggcttttgggaccgggagac
gggggatcggagcgcaacaggagccgcgatggagcagcggtgtctacaggtggaatctca
ccagccttcaagcagaccaaagcccagcgagcccgcaccatggccctgtacaatcccatt
cccgtcaggcagaactgcttcaccgtaaacagatcgctcttcatctttggcgaggacaac
gttgttcgtaaatacgccaagaagatcattgagtggcctccgtttgagtacatgatcctg
gccaccatcatcgccaactgcatagtgctggcgctggagcaacacctccctggggatgac
aagacgcccatgtccaagaaactggagaaaacagagccctacttcatcgggatgttttgc
ttcgaggctggaattaaacttgtggcgctgggatttgtattccacaagggctcctacctg
aggaacggctggaatgtcatggacttcatcgtcgtcctcagcgggatcctggctacagct
ggtgcacacatgaacatcccagtggatctgcggacactaagggcagtacgggtgctgcgg
ccactcaagctggtctctgggattcccagcctgcagatcgtgctgaagtccatcatgaag
gccatggtgcctctgctgcagattggcctgctgctcttcttcgcaatcctcatgttcgcc
atcatcggcctggagttctacagcggcaaactgcacagcaactgtgtggctctcccgggc
attctggacaatgagacactggtcagctcagaggtggagttcccctgtggcttccggaag
tgcccgcccggttacacctgtagcgatttcacctggatcggccccaacgacgggatcacc
cagtttgacaacatcctgtttgccctgctcactgtattccagtgcatcaccatggaaggc
tggaccaccgtactttacaataccaatgatgccttaaaccccacctggaattggctctat
ttcatccccctcatcatcatcggctctttcttcgtgctcaacctggttctgggagtgctg
tcgggggagtttgcgaaggagagagagcgggtggagaaccggcgggccttcatgaagctg
cgtcggcagcagcagatcgagagggagctcaacggctaccgtgcctggatcgaccgagca
gaggaggtcatgcttgcggaggagaacaaaaactcagggccctctgctctggatgctccc
gacacgctgtctgaatgggaaacagacagtaaccatgtgctgaagagagccaccatcaag
aagagaggagaggctatccaccggcggccaggggacgatcagtacacagacatctcctct
gtgggcatgcccctgaatagagccagcatcaggagcgccaagcggggcccgacggcgtac
ttccgtcgcaaggaacgcatgctccgcatctcggtgcggcgcatggtgaagacacacacc
ttctactggactgtgctgggcctggtggccctcaacacgctctgcgtggccatcgtccac
cacgaccagcccgagtggctatccactttcctctactatgcagagttcctgttcttgggc
ctgttcctcacggagatgtttctaaagatgtacggcatgggaccgcgcctgtacttccac
tcctccttcaaccgctttgattttggagtgattgtggggagcatccttgaggtgctgtgg
ggcttcatcagacccggcatgtcgttcggcatcagcgtcctgagagccctgcgcctgctg
aggatcttcaagataaccaagtactgggcatctctgcggaacctggtggtgtctctgatg
aactctatgaagtccatcatcagcctgctcttcctcctcttcctcttcatcgtggtcttt
gccctgctggggatgcagctcttcggcggcaggttcatctttgaagactacacgcccaca
aacttcgatactttcccagccgccatcatgaccgtctttcagatcctcacaggtgaggac
tggaatgaggtgatgtatgacgggattcgctctcagggcggggtgaagtcaggcatgtgg
tcctccatctacttcatcgttctcactctgtttggcaactacacactcctcaatgtattc
ttggccattgctgtggacaatctggccaatgctcaggaactcaccaaggatgaagaggag
gaggaagcggcgttcaaccagaagcacgccctgcagaaggccaaggaagtagggcccatg
tcctccatcatgtcctcagacaggcggaggaggccctacttgtacaggaggcgtgccata
cacaggagccaccccgcctactccctggaggaggcggagagattcgccgagagcgtcaga
gcgccatcattcaactcctctacctctttcatgtccaggcgggagcggcggcggcgcttg
accatgtccgtgtgggagcagcgcaccagccagctgcgccgtcaccggcagatgtccagc
cgtgaggtcctgtgcagcggcaagcccggcgaggaaaacaaccacgagctcaactgcaag
cccacgctctcccccaccgatggctcgtgccggttgcccaatcccgtcatcgcccccacg
ccagacgccactgccgctgtgcctggggacgccaccaccactgccatcctgcccatggat
ctgaccctgagtgggaatcccttgactctgcctgagccgccgctgagcctgccggaaccg
ccactggtcatggatctgccgttaccggaacccccactggtggcggatgtgcccagccca
gaggccacgtcggcgactgaggcgaagcagggagtcaccaaccactggcaccagcccttg
ggcgcccgcaggctgaatggcgagcggaggcagagggcggtgaggaagttccgccccccc
accggggacacgctcactccagacatgggggtgaggcccaggaggccgcggcaccgggag
gcccggaacgaggagccaggtgggagagactcgcaggaggagtgcagccgctccgtcagc
agggagagaggggcgtcggacacagcggaggaggagaaccacgagggaggaggtgctggc
cagagggaaacatccggaaatgaacagagcaggcacaatgacccagaattctctgccttt
cccgacctcttgtccactacgcccgaatcgtgttcacccaacaccagaaggatggaggag
tcctcccaagatgaccccccgaccctacagctctccgatgaccctgcccccgacccctcg
gatggctctaagggtggcggtgagggaggggtcaaccttgatccctccagtctcggctcg
gagaagtcccctctcagcggcagcgtagtcatcgaggtgacagacctgcagacgtcctca
ctggagctgacctccatgagtggtaacaccaaagacgtggaggctgcggtgaggtctgag
aaggaggaggaggaggaggctagcaatccacccagagccgaaccatctaacagcatgttt
ctcttcaaacccaccaatcctgtccgcagggcctgtcactacattgtcaacctgcgttac
tttgagatgtccatcctgctggtgatcgcggccagcagcatcgccctggccgccgaggac
ccggtggccaccaactcggactggaacaaagttttgcgatactttgattatgtgttcacg
ggagtgttcacctttgaaatgatcatcaagatgattgatcaaggtttgattctccacgat
ggctcctactttcgagatctatggaatattctggacttcatagtagtgatcggagccttg
gtggccttcgctctcacgaatgtgatgggaaataataagggaagggatattaagaccata
aaatctctgcgagtccttcgagtcctgagacctttgaaaaccatcaagagactccctaaa
ctaaaggcagtatttgactgtgtggtcaactctctaaagaacgtcttcaacatcctcatc
gtctacaagctcttcatgttcatcttcgccgtcatcgctgtgcagcttttcaaagggaag
tttttctactgcacggacagctccaaagacacagagaaagactgccagggatattacatc
gactacgagaaatacaagaaggaagtgaaaaagagggagtggaggaggcacgactttcac
tatgacaacgtggtctgggctctgcttaccctctttacggtctccacgggagagggctgg
ccgcaggttctgcaacattctgtggacgtgaccgaggaggaccgcggacccagccggggg
aaccgtatggagatgtccatcttctacgtggtctactttgtggtgttccccttcttcttt
gtgaacatcttcgtggctttgatcatcatcaccttccaggagcagggtgacaagatgatg
gaggagtgcagcctggagaagaacgagagggcctgtattgactttgccatcggtgccaaa
ccgcttacccgctacatgccccagaaccgtcagaccttccagtaccgactgtggcacttt
gttgtgtccccttcgttcgagtacacagtgttggccatgatcgctctcaacaccatagtc
ctcatgatgaagtactattcagctccaccggcatatgatacagttttaaagcacctgaac
acagcgttcaccgtgctcttctctgtggagtgtgtgctcaagatcatggctttcggcttc
ctgaactactttcgggacacgtggaacatatttgacttcattactgtccttggcagcatc
actgaaattgtagtggtggacctgcagtccggagctgtcaacatgagcttcctgaagctc
ttcagagcagctcggctgattaagttgctcaggcagggctacaccatacgcatcctcctc
tggacgtttgttcaatctttcaaggctctaccttatgtgtgtctgctcattgccatgctg
ttcttcatattcgccatcattggaatgcaggtttttggaaatataaagctggatgagaag
actcacatcaaccagcataacaacttcaagacgttcttcggcgctctgatgctcctcttc
aggagtgccacgggcgagtcgtggcaggagatcatgctgtcgtgcctggggggtcaggac
tgtgagcaggacctgtccatctccactccggctctggccaccgagcacaagggaggctgc
ggcacagacttcgcctacttctacttcgtcgcctttatcttcttcagctcattcctgatg
ctgaatctgtttgtggcggtcatcatggataactttgagtacctcacacgagactcctcc
atcctgggcccccatcacctggatgagtttgtgcgcatctggggcgagtacgaccgcgct
gcatgtggccgtattcattacaatgacatgtacgagatgctgacgcacatgtctccacct
cttggcctgggcaagaaatgtccatccaaagttgcttataagaggctggtgctgatgaac
atgcctgtggacgaggagatggccgttcacttcacctccacgctcatggccctaatccgc
accgccctcgaggtcaagatcgcccgagggggagaggacaggatccagatggacatggac
ctgcagaaggaaatcagtgttatttggccaaatctctcccagaaggccttggacctgctg
gtgcctattcacaaagccggggacatgactattggtaagatctatgcagccatgatgata
atggactactacaaacagagtaaagccaagaagttaagacagcagctggaagaccagaaa
catgcgcccatgttccagcgcatggacgcctcctctctgcctcaggacattctcagcaat
gccaaagccctgcccttccttgctcacagcactggctctgccctgggcggatttgcggcc
ttgagccccatgtctccccaggagttgttcatgccgcctgttccatgccatgatgaggag
gaggaggaggaagaaccatatcaccaccactatcatggccatcacctgcacactatggtg
tctactgagagcactctcatgaagcgctccttctccaccatcggtgaccagtgtgtgaac
gacctgtggcaggaggagtactctctggagaggatcagccctgaccagctgcacaggcca
cgccaacgcagcttcagaggtgtcaggtctaacctcaaagagcaattggacaaggagagg
ggacgttccaaggagcggcgccacctcctctcccccgacgtgtcccgatgtaactccgag
gagcgcagccagcacccatcacaggagcgcaagcagtcccgctcgcccagtgaaggacgg
gcacgctctccgctaaaacaggggatcaattcagcaagctccaacctgtccacctcggag
aacagcaccccccgcagtcgccggcagctgcctcagaccccctcccggccccggccgcac
atctcttactcccccctggtgtgccgagcgccgttgccccctccggcctccacagaggcg
ctacccaggactcagacagaagctgaggcagaggagccgaggctgggtgtggggctcggc
ccgaccttgggcccgaccttgggcccctctccggcccctggtctcgcggcgctgagtgcg
ggggccctgcactcgtctccccagcgctacatctcagagccatacctggcgctccacgag
gagctccacagcctggaggcagcaggcccggaggagactctcaccttcgaaacggccatt
gccaccagcctgggccgtgccaatgccatcagctctgccccacagctgcgccactcttgg
caggtgcccaacggccacttccgcaagcgcctcggccaggcctcctccagcgctgcctgt
gacctgctgagtgacaccgatgaggacgaccgctgctag
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integrated database retrieval system
