Clupea harengus (Atlantic herring): 105898245
Help
Entry
105898245 CDS
T09045
Symbol
sned1
Name
(RefSeq) sushi, nidogen and EGF-like domain-containing protein 1 isoform X1
KO
K24470
insulin-responsive sequence DNA-binding protein 1
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
char04990
]
105898245 (sned1)
Domain-containing proteins not elsewhere classified [BR:
char04990
]
EGF-like domain-containing proteins
hEGF / cEGF domain-containing proteins
105898245 (sned1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
NIDO
hEGF
EGF_TEN
fn3
EGF_2
EGF_CA
EGF_Teneurin
cEGF
MAGP
Motif
Other DBs
NCBI-GeneID:
105898245
NCBI-ProteinID:
XP_031431395
Ensembl:
ENSCHAG00000020804
UniProt:
A0A6P8G830
LinkDB
All DBs
Position
10:complement(15304107..15343050)
Genome browser
AA seq
1412 aa
AA seq
DB search
MHPPSPPPPPPPAPLHPPSPLLRVGVPAMGLRALMTCCLWCLLSLELLGGARAAVPLEDF
YPFGQDEGDTKTVSQDDGGTGLQEISVAFPFFGDRHTGLYVNNNGLVSFLREVSQFTPVA
FPIAGDRRVVAPFWADVDNRRAGSVFYRESKDPAILQRATDDIRGYFPEFQEFTSSWVLI
ATWHEVTFFGGSAITPVNTFQVVLITDGELSFTIFQYHNITWTTGMHASSGGDLAGLGGI
AAQAGFNAGDGKRYFNIPGSRTDDVVEVESTTNVGYPGRWVFRIDDAHVQVGSCNDSASV
CPHLRPCLNGGRCIDDCIKGNPSFTCSCLAGFTGRRCQIDVDECASYPCQNGGTCADRVN
GFMCLCQPGFTGPLCEKDVDECQSDPCLNGAECVQGVDNFVCVCAPGYTGPLCETDIDDC
EPMPCLNGGECSDLVNNYTCTCTAGFIGRRCETELVVVAPTNATAEAENQTASCEAEGCR
QVCEYVSPGNFNCTCSPGYYGDNCEEECLCQNGGVCVDMNGTCDCPTGYTGLFCQFEVTQ
TPCSNSRPCPHGGPCLEYGGTYLCTCQTGGVDFDHKDFYPYVQPQSACDSSPCQNGGYCY
DQDGGYTCECKHGYRGKHCEKVRLSACASSPCRNGGSCTDDGGSYHCVCPFRFTGKHCEV
GKPDPCASSPCLNGGTCFHYIGKYKCECTATYSGRHCEISRGSSRAPDGVDCGPPARPKH
ADVKYSSTLAGAIAIYVCHPGYTPVPRATQSICGNQGAWSQPPICEEINECLSQPCLNGG
TCRDRVASFLCECEEGFSGPRCQTDVDECLSEPCKHGGTCEDQPGSYLCHCPQGYSGLDC
EIEQEGCVPNPCLNGGVCRVYRRTPRCVCKDGFFGDRCQMLDNPCVLQPCGNRGFCRSDR
RGNYSCACKVGHTGRDCERDLLPPSGLRVLRVEEDEVELRWDQLDTSDSPLSGFAVTYAP
LGRGPRRSDFLERQHSSYLLQGLEPGLLYNISTFSVRRGANSNDISQPAFALIRTRPRKA
EQLQVVNVSSSQLWLRWLLQAAHHASVSQVRLSLTPSDGSGARTAILNTSITEYGFSSLL
PGQMYTVDVVTQSGVRPEELPSTSHSAGPLLVWTRPLPPQNLSLGHVTDTSAQVSWDRHP
RSVPDGFVVNVTRGLNTRSRYLPDGRLGSYTLRELSPGQHYRLALTAVRNTGQEQVHSVP
QHLAFTTLSVRETPSGRPTGRHKPQDVGVAEDREHSEELPRYTELIDGRGRIMAKFTNLP
RNAIRHRLRPEPPVKLEKMEETTNKISLALEIAEEVTKKKAELPRDCRSSLPCQNGGTCV
KGGDSYSCDCATGFKGRQCELFCQRVPHPCTRLYSETKTVPVWEDGVCHYLYKKTYKVQQ
DVCYREICEPQLPKKTRRFLQLRSRDFWVLHP
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgcaccctccttcacctcctcctcctcctcctcctgctcctctccatcccccatcccct
cttctccgcgtgggtgtgccggctatggggctgcgagcgctgatgacctgctgcctctgg
tgcctgctctccctggagctcctggggggagcgcgggcggccgtgcccctggaggacttc
taccccttcgggcaggacgagggcgacacgaagacggtgtcccaggatgacggcggcacg
ggactgcaggagatctcagtggcgttcccctttttcggcgaccgacacacgggactctat
gttaacaacaacgggttggtgtcatttctcagggaggtgtctcagttcactccagttgcc
ttccccatcgccggtgaccgccgggtggtggctcccttctgggcggatgtggataaccgg
cgcgccgggtcggtcttctaccgcgagagcaaggaccctgccatcctgcagcgggccact
gacgacatcaggggctacttccctgagttccaagagttcacaagttcctgggttctcatt
gccacctggcatgaggtcaccttctttggaggaagtgctattaccccggtgaacacgttc
caggtggtccttatcacagatggagagctgtccttcactatcttccaataccacaacatc
acctggaccactggcatgcacgccagcagtgggggtgacctggccggcctggggggcatt
gccgcacaggcaggttttaacgccggcgacggcaagcgttattttaacattccgggctcg
cgcaccgacgacgtggtggaggtggagagcaccaccaacgtgggctaccccggccgctgg
gtgttccgcatcgacgacgcccacgtgcaggtgggcagctgcaacgactcagcctccgtt
tgtcctcaccttcgcccgtgtctgaatggcggacgctgcattgacgactgcatcaagggg
aacccctcattcacctgctcctgcctggccggcttcacaggacgccgctgccagatagat
gtggatgaatgtgcctcgtacccctgtcagaacggaggcacctgcgctgacagagtgaat
ggcttcatgtgcctgtgccaacctggattcactgggcctctttgtgagaaagacgttgat
gagtgccaaagtgatccatgcctcaacggagccgagtgtgtgcaaggtgtggacaacttc
gtctgtgtgtgcgccccaggctacacagggcccctgtgtgaaacagacatagacgactgt
gagcccatgccatgtctgaatggaggcgagtgctctgacctggtgaacaactatacctgc
acctgcactgcaggcttcattggcagacgctgtgagacagagctggtggtggtggcccca
accaatgccacagcggaggctgaaaaccagacagcatcatgtgaggcggagggctgccga
caggtgtgtgagtacgtcagccccggaaacttcaactgcacgtgcagccctggttactac
ggcgacaactgcgaagaggagtgcctgtgccaaaacggaggtgtgtgtgtggacatgaat
ggcacctgtgattgtcccacgggctacaccggactcttctgtcagtttgaggtgacccag
accccctgcagtaacagtcgcccctgcccccacgggggaccctgtctggagtatgggggg
acctacctgtgtacttgccaaactggaggggtggactttgaccacaaggacttctatccc
tatgtacagccccaatcggcctgtgactcgtcgccgtgtcagaatgggggctactgctac
gatcaagatggaggatacacctgtgagtgcaagcatggatacagaggaaaacactgtgaa
aaagtcagattgagtgcctgtgcttcgtccccctgtcgtaatggaggctcgtgtacggac
gatggggggagctaccactgtgtgtgtccattcagatttactggcaaacactgtgaagtg
gggaagcctgacccctgtgcgtccagcccttgcctgaacggaggcacgtgtttccactac
atcggcaagtacaagtgtgagtgcaccgcaacctacagcggccgccactgcgagatcagc
cgtggctcctcacgtgcacctgatggggtggattgtgggccacctgctcggccgaagcat
gccgacgtgaagtactcctccactcttgccggcgccatagcgatatacgtgtgccacccg
ggatacacccctgtgccccgcgctacacagagcatctgtggcaatcagggagcctggagc
cagccccccatctgtgaggagataaacgagtgtctatcgcagccctgtctgaatgggggg
acttgcagggacagggtggcctccttcctgtgtgagtgcgaggaggggttcagcggtccg
cggtgccaaaccgatgtggatgagtgtctctcagagccctgtaaacacggtggtacctgc
gaggaccagcctggctcctacctctgccattgcccacagggatacagcggactggactgt
gagattgagcaggaggggtgtgtgcccaacccatgcctgaatggaggagtgtgtcgagtc
tacaggcggaccccacgctgtgtttgcaaggatggattctttggcgaccgatgccaaatg
ttggacaatccatgtgtactacagccttgtgggaacaggggcttctgccgtagcgacaga
agggggaactacagttgtgcctgcaaagtgggacacacgggcagagactgcgagagagac
ctgttgcctccatctggtctgcgtgtgctccgggtggaagaggacgaggtggagctgcgc
tgggaccagctggatacgtcagacagccctctgagcggtttcgctgtgacctacgcgccg
ctgggccgcgggccacgcaggagcgacttcctggagcggcagcactccagctatctgctc
cagggtctggagcccggcctgctctacaacatctccaccttctccgtgaggcgcggggcc
aacagcaacgacatcagtcagcccgcctttgctctcattcgcacacggccgcggaaggca
gagcagctgcaggtggtgaatgtctcctcctcccagttgtggctgcgctggctgctgcag
gcggctcaccatgcctcagtcagtcaggtgcgcctctccctcaccccctctgacgggagt
ggagcccgcacggctatactcaacaccagcatcacagagtatggctttagttccctgctt
ccaggtcaaatgtacacagtggatgtggtcactcagagtggtgtaagaccagaggagctt
ccgtcaacgagccactctgctggaccactccttgtctggacaaggcctcttccaccccag
aacctctcgctgggtcacgtgaccgacacctcagctcaggtctcatgggaccggcatccg
cggagcgtcccggacgggtttgtggtgaacgtgacacgtggcctgaacacgagaagccga
tacctgcccgacgggagactgggcagctacacactccgagagctcagtccggggcagcac
tacagattggccctgaccgcagtgcgaaacacagggcaggaacaggttcacagcgtaccc
cagcacttagccttcaccaccctgtcggtgagggagactcccagtgggcgccccacaggc
cggcacaaacctcaggacgtgggcgtagcagaggacagggagcactcagaagagctaccc
agatacacagagttgattgatggcagggggaggataatggccaagttcaccaacctgcca
aggaacgcaatcagacaccgcctgagaccggagcctccagtcaaactggagaaaatggag
gaaaccaccaataaaatcagcttggccttggagattgctgaggaggtgaccaaaaagaag
gccgagctgcccagggactgccgcagcagcctgccctgtcagaacggggggacgtgcgtc
aagggcggcgacagctacagctgcgactgcgcaacgggcttcaagggcagacagtgcgag
ctgttctgccagagagtgccacacccatgcacccgtctctactcggagacaaagactgtg
cccgtctgggaagatggagtctgccattacctgtacaagaaaacatataaagtacagcag
gatgtttgttacagagagatttgtgagcctcagttgccaaagaaaacaaggagatttctc
cagctcagatccagagatttctgggttctgcatccctag
DBGET
integrated database retrieval system
