KEGG   Clupea harengus (Atlantic herring): 105898333
Entry
105898333         CDS       T09045                                 
Symbol
kdm4b
Name
(RefSeq) lysine-specific demethylase 4B
  KO
K06709  [histone H3]-trimethyl-L-lysine9/36 demethylase [EC:1.14.11.66 1.14.11.69]
Organism
char  Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:char00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:char03036]
    105898333 (kdm4b)
Enzymes [BR:char01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.66  [histone H3]-trimethyl-L-lysine9 demethylase
     105898333 (kdm4b)
    1.14.11.69  [histone H3]-trimethyl-L-lysine36 demethylase
     105898333 (kdm4b)
Chromosome and associated proteins [BR:char03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    105898333 (kdm4b)
SSDB
Motif
Pfam: JmjC zf-HC5HC2H_2 Tudor_2 zf-HC5HC2H PHD_2 JmjN PHD DUF4537 53-BP1_Tudor Tudor_5
Other DBs
NCBI-GeneID: 105898333
NCBI-ProteinID: XP_012680815
Ensembl: ENSCHAG00000009900
UniProt: A0A6P3VTP0
LinkDB
Position
10:16417460..16467051
AA seq 1098 aa
MSLESPVAPLESSMPLSLESSDAPSPSPDPAPSLSETPSSPPTLPPSSPGAVPSPPTPVP
NAACKIMTFRPTMEEFSDFGKYIAYMETQGAHRAGLAKVIPPKDWKPRRTYDTIEEMMIP
APIMQVVTGQSGLFTQYNIQKKPMSVGEYRKLANSKKYCTPLHKDFDDLERKYWKNLTFV
SPIYGADISGSLYDPDITEWNIGHLNTLLDMVEQECGIVIEGVNTPYLYFGMWKTTFAWH
TEDMDLYSINYLHFGQPKSWYAIPPEHGKRLERLAQGFFPGSSQGCDAFLRHKMTLISPS
ILKKYSIPFDRITQEEGEFMVTFPYGYHAGFNHGFNCAESTNFATLRWVDYGKMATQCTC
RKDMVKISMDVFVRCLQPERYEQWKQGKDSTVLDHQRPTTLSCPELEHWRQNKVTFREKL
FRRAMQKKEQLRRLKQEEVRVLQEEGVELDLAEYQQQVESKEAQRRQERDERMAKEALLT
LEALEREEQLQQQQQLTEETLADTQPPLQDGEMKKKKKKKKKIKVKTEPIDPSFEGIFEK
FATTNMMTGSQTVPEDAERKPVQVKKSRRHPISKPPMRSPLFIVKQETFSDEGGDAEQEV
HSAGHLWQDHSPNLLSERRFNAAMATIEPHCAVCTLFCSYKQKEAPPLDSASLLLSRCGS
FTWPLVPEMCFSSGGENTEPPPSSTVTRDDGTSLLLSCSSCSLQVHASCYGVHPEMQKEG
WMCSRCTAVAWTAACCLCNLRGGALKMTTDSRWVHVICAIAVPEARFVNATEREPVDVTA
IPDTRKGLICVYCHKPSRQPCGACVQCSHESCSTSFHVTCAHLAGVVMKPADWPYVVSVT
CPKHKQTNQRVKLGSRDLSLGQQVIGRYSNGWFYRCFIIGTATQTLYEVNFDDGSYCDNI
YPENVVSHDCLRSGPPETGEILCVGTADGQMLNASFIRELTQRYYQVEFQDESQLLLKRS
EIHTLDQELPKRVMARLVLSAVKQESHSQDDDEVQAAKRPRLPTPPPQVQAPPMPASEPP
SGGPLPLPLPQDDDPHPQRGPWPRPLRAHPCLLSAPPPTLPLTHAGPPLAGPGQCVHPQH
RLRGLHGGPAQLELPPPR
NT seq 3297 nt   +upstreamnt  +downstreamnt
atgtctctagagtcccctgtggccccactggagtccagtatgcccctcagcctggagtcc
agtgatgccccctcccccagccctgaccctgcgccctccctctcagaaacccccagctcc
ccccccaccctgcccccctcctcaccaggtgcagtcccctccccacccaccccggtccca
aacgccgcctgcaagatcatgaccttcaggcccaccatggaggagttcagcgactttgga
aagtacatcgcttacatggagacccaaggagctcaccgcgctggcctggccaaggtaatc
ccacccaaggattggaagccacggcgcacttacgacaccatcgaggagatgatgatcccc
gcgccaatcatgcaggtggtcaccggccagtctggcctcttcacccagtacaacatccag
aagaagcccatgagcgtcggagagtaccgcaaactggccaacagcaagaagtattgtacc
ccgctacacaaagactttgatgacctggagaggaagtactggaagaacctgactttcgtc
tcgcccatttatggtgccgacatcagcggctccctctatgacccagacatcacagagtgg
aacattggtcacctgaacacgctgctggacatggtggagcaagagtgtgggatcgtgatt
gagggggtgaacacgccctacctgtacttcggcatgtggaagaccaccttcgcctggcac
acggaggacatggacctctacagcatcaactacctgcacttcggacagcccaagtcctgg
tatgctattcctccagaacatgggaagcggctggagagactagctcaaggtttcttcccg
ggcagctctcaggggtgtgacgccttcctgcgccacaagatgacgctcatctccccctcc
atcctcaagaagtacagcatccccttcgaccggatcactcaggaggagggggagttcatg
gtcaccttcccgtatggttaccacgccggcttcaaccacggcttcaactgtgccgagtcc
accaacttcgccacgcttcgctgggtagactacggcaagatggccacgcagtgcacatgc
cgtaaggacatggtgaagatctccatggacgtgtttgtgcgctgcctgcagcccgagcgc
tatgagcagtggaagcagggcaaggacagtaccgtgctcgaccaccagaggcctaccaca
ctcagctgccccgagctcgagcactggaggcagaacaaggtcaccttcagagagaagctc
ttcaggagagccatgcagaagaaggagcagctgcggcgcctgaagcaggaggaggtgcgt
gtgctgcaggaggagggcgtggagctggacctggcggagtaccagcagcaggtggagtcc
aaggaggcgcagcggcggcaggagcgcgacgagcgcatggccaaggaggcgctgctcacg
ctagaggctctggagagggaggagcagctgcagcagcaacagcagctcactgaggaaacg
ctggcagacacacagcctcctctccaggatggagagatgaagaaaaagaagaagaagaag
aaaaagatcaaggtgaagacagagcccattgatccttcctttgagggcatcttcgagaag
tttgccaccaccaacatgatgacggggagccaaacagttccagaggacgccgagagaaaa
cctgtgcaggtgaagaagtctcgccgacaccccatcagcaaaccccccatgaggtcccca
ctcttcattgtgaagcaggagaccttcagtgatgaagggggcgacgctgagcaggaagtc
cactccgccggccacctttggcaggaccactccccaaacctgctctccgagcgacgcttc
aacgcagccatggcaaccatcgagccacactgtgctgtgtgcacactgttctgttcatac
aaacagaaggaggccccccctctggactcggcgtcactgctgttgtctcgctgtggcagc
ttcacgtggccgctggtccctgagatgtgcttcagctccgggggtgagaacacagagccc
cccccctccagcaccgtcacccgtgacgacggcaccagcctgctcctctcctgctccagc
tgcagcctgcaggtccacgccagttgctatggtgtccacccggagatgcagaaggaaggt
tggatgtgctcaaggtgcacagcagtggcctggacagcagcctgctgcttgtgtaacctc
aggggtggagctttgaagatgacaacagatagcaggtgggtccatgtgatctgtgccata
gcggtcccagaggctcgcttcgtcaacgccaccgagagggagccagtcgacgtaactgct
atccctgacaccaggaaaggcttgatctgtgtgtactgccacaagcccagcaggcagccg
tgcggcgcgtgtgtccagtgttcccacgagagctgctccacctccttccatgtcacctgc
gctcacctggccggggtcgtcatgaagcccgccgattggccctacgtggtgtcagtcacc
tgcccgaagcacaaacagaccaatcagagggtgaagctggggtcgcgggacctgtcgcta
ggccagcaggtgattggtcgctatagcaacggctggttctatcgctgttttatcatcggc
actgccacacaaactctctatgaggtcaacttcgatgacggctcctactgcgacaacatc
taccctgagaacgtggtgagccatgactgcctgcgctccggtccccctgaaacgggggag
atcctctgtgtggggaccgcggacggacagatgctcaacgcctcattcatcagggagcta
acacagcgatactaccaggtggagtttcaggatgagtcccagctgcttttgaagcgctct
gagatacacacactagaccaggagctgcccaagagagtcatggcacgcctggtcctgtcc
gctgtgaagcaggagtctcactctcaggatgatgacgaggttcaagctgccaagaggcca
cgcctcccaaccccgcctccccaggtccaggctccacccatgccagcctcggagcctcct
tcggggggacccctccccctccccctcccccaggatgatgacccccatccccagcggggc
ccctggccccggcccctacgggcacatccctgcctcctcagcgcccccccaccaaccctg
ccactcacccatgctggcccccccctcgcagggccaggacaatgtgtacacccccagcac
cggctacgtggcctacatggaggccctgctcaactcgaacttccccccccccgatga

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