Clupea harengus (Atlantic herring): 105898347
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Entry
105898347 CDS
T09045
Symbol
taf3
Name
(RefSeq) transcription initiation factor TFIID subunit 3
KO
K14650
transcription initiation factor TFIID subunit 3
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105898347 (taf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
char03021
]
105898347 (taf3)
Transcription machinery [BR:
char03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
105898347 (taf3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Bromo_TP
PHD
PHD_UBR7-like
PHD_2
PHD_5
Motif
Other DBs
NCBI-GeneID:
105898347
NCBI-ProteinID:
XP_031438142
UniProt:
A0A6P8GRQ4
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Position
16:complement(6477513..6539642)
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AA seq
929 aa
AA seq
DB search
MCENYARSVLRVSVAQICQVLGWDAVQLSACDMLSDVLDRYIQQLARSCHRYAELYGRTD
PVLSDIGRAFGVLGVSLSELEDYVNHLEPVAFPQNTHLFPVAKSSTLQFPSPCEERRDYI
PDYLPPLVSLQEDEEEEPEPVAMGTSAEAMQVSVEEDDGEEDYDEEAENAENRPTKREAD
EAFPLGVMPTAKRPRLGVSLNPDSSPEWTSEPREPLSSLNPQLPMSPSSPPLSPAPTPAA
RPPATPGRKPPRPPLSSPGRKTKSPRRGGANVSPVRIPKLTQKDKKKKNSPRSPRGAAAA
AATHAAQLPSPPLGSSQRDGRVGPGGAGGRSGGLANSDLHAQRASMHDTGDADIDDSISA
VIARACASGGSGSARPHDPYDLPSDSDSDSDPGLSLSHTLLGRHVGGKNAHTPAGSKYAP
PGRLNITSTPLPPAYSLDRSIDEVVRQAGKRVSAATPSDDPDDLSSPPLSPPTPQPLPKL
CLDDFSVGAATEGKKKKPKKESKLKAKRKEGKDKPKGKEKEKTKSKEKKKEKKSREAEGR
LSWKDAGESEGRDDSFSMAAAAAAAAAAAAAAISVAEERREKEKHKEKKKEKLKSKKEKA
KREKAKERVKEGKKKKKMTQEEREREATLSLFGPAALLLLPSLPPLPPVVVKTPAASGLG
GDKTPKSKEKQKKKDKKEKKKKKEKDREKEREKEREKEREKEREQQEKEEKKKGKEKEKG
GKAKEKAKELAKLEKVKAADPPVLLSPVIPRLTLRVGAGQDKIVISKVVPDSEASAPPPP
APLPPPVKTPTARSGPGSRGRAPPTPAVVAPPPPPPPAPAPVPLSLPTHLPPTPPPALGA
AKSGCSVVTETVSAYVVRDEWGNKVWICPGCNKPDDGSPMIGCDQCDDWYHWLCVGILTP
PPEDQQWFCVKCAGKKTDKKQKKRRRKAN
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgagaactatgcccgctctgtgttgcgggtgtcggtggctcagatttgccaagtg
ctgggctgggatgcagtacagctaagcgcttgtgatatgctgtccgatgttctggaccgc
tacattcaacagctggctcgaagctgtcatcgttatgccgagctgtatggccggaccgac
ccagtgttgtcggacatcggccgggccttcggggtactgggggtgagcctgtcagagctc
gaggactacgtgaaccacctggagcctgtggccttccctcagaacacgcacctgttcccc
gtcgccaagagcagcacgctgcagttcccctctccctgcgaggagaggagggactacatc
cctgactacctgccacccctcgtctccctgcaggaagatgaggaagaggagccggagccc
gttgctatggggacgtcggcagaagccatgcaggtgtctgtggaagaggacgatggcgag
gaagactacgacgaagaggccgagaacgcagagaaccgtccgaccaagcgtgaggcggac
gaggccttccccctgggcgtcatgccgacggccaaacggccccgcctgggcgtcagcctc
aacccggactccagccctgagtggacctcggaaccccgcgagccgctgtcctccctcaac
ccccagctgcccatgtctccctcctcaccgcccctctcccccgcccccacccccgccgca
cgcccccccgccaccccggggcgcaagcctccgcggcccccgctctcctcgccggggagg
aagaccaagtcgccgcggcggggcggggccaacgtgagccccgtgcgcatccccaaactg
acccagaaggacaagaagaagaagaactccccgcggagcccccggggggccgccgccgcc
gccgccactcacgcggcccagctgccctcaccgcccctgggctcgagtcagagggacggc
agggtgggtcctgggggtgccggaggtcgctctggcgggctggcgaactccgacctccat
gcgcagagggcgtccatgcacgacacgggggacgcggacatcgacgattccatctccgcg
gtgatcgcccgggcatgtgccagcggggggtcgggtagcgcccgcccccacgacccgtac
gacctcccgtccgactcggacagcgactccgacccgggcctgtcgctctcacacaccttg
ctgggcaggcacgtcggtggcaagaacgcacacacgccggccggctccaaatacgccccg
ccgggtcgactgaacatcacctccactcctctgccgcccgcctacagcctggaccgctcc
atcgacgaggtcgtgcggcaggccggcaagcgcgtctccgcggcgacgccctccgacgac
cccgacgacctctcctcgccgccgctctcgcccccgaccccgcagcccttgcccaagctc
tgcctggacgacttctcggtcggcgcggcgacggagggcaagaagaagaagcccaagaaa
gagtccaagctgaaggccaagaggaaagaagggaaagacaaacccaaggggaaggagaag
gagaagaccaagagcaaagagaagaagaaagagaagaagagcagggaggcggagggccgg
ctgtcgtggaaggacgccggggagtccgagggccgggacgactccttcagcatggcggcg
gcggcggcggcggctgctgctgcggcggcggcggccatctcggtcgcggaggagcggcgc
gagaaggagaagcacaaggagaagaagaaggagaaactcaagagcaagaaggagaaggcc
aagcgcgagaaggccaaggagcgcgtgaaggagggcaagaagaagaagaagatgacgcag
gaggagcgggagagggaggccacgctgtcgctcttcggccccgccgccctcctcctgctg
ccctccctgcccccgttgcccccggtcgtcgtgaaaacccccgccgcctccggcctcggg
ggcgacaagacgcccaagagcaaggagaagcagaagaagaaggacaagaaggagaagaaa
aagaagaaggagaaggacagggagaaggagagagagaaggagagggagaaggagagagag
aaggagagagagcagcaggagaaggaggagaagaagaaaggaaaagaaaaagagaagggt
ggaaaagcgaaggagaaggcaaaggagttggcaaaactagagaaggtgaaggcggctgat
ccccctgttctcctctccccggtcatcccaaggttaactctcagagtgggagctggacag
gacaagattgtcatcagtaaggtggttccagactccgaggccagtgccccccctcctccc
gctcctctccctccccccgtgaagacacccactgccaggtctggtcccggcagccgaggc
cgcgccccccccacaccggccgtggtggcccccccgcctcctccgcccccggcccccgcc
ccggtgcccctgtccctgcccacacacctgcccccgacccccccgccggccctcggtgcg
gccaagagcgggtgcagcgtggtcaccgagaccgtcagtgcctacgtggttcgtgatgaa
tgggggaataaggtctggatctgtcctggctgcaacaaaccagatgatgggagtccgatg
attggctgtgatcagtgcgatgactggtaccactggctgtgtgtgggtattctgactccg
ccccccgaggaccagcagtggttctgtgtgaagtgtgccggcaagaagaccgacaagaag
cagaagaagaggcgacgcaaagccaactaa
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