Clupea harengus (Atlantic herring): 105898367
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Entry
105898367 CDS
T09045
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03013
Nucleocytoplasmic transport
char03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105898367 (upf2)
03015 mRNA surveillance pathway
105898367 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105898367 (upf2)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105898367 (upf2)
mRNA cycle factors
P-body specific factors
105898367 (upf2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
105898367
NCBI-ProteinID:
XP_031438534
Ensembl:
ENSCHAG00000013366
UniProt:
A0A6P8GH75
LinkDB
All DBs
Position
16
Genome browser
AA seq
1298 aa
AA seq
DB search
MPAERKKSVNMEEKEPGNSSKEKEREREGDRRPTSSREKGKDEPKTGKKDGGKAAEEKKR
RIEDEKRKKEEKERKKKEEEKLKAEEEQKKKEEEEKRLQEEEERKKQEEEAKRLKEEEAA
LLKETEEAQQLHQESWERHHTRKELRARNQSAPEGRPEEAFFGRLDSSLKKNTAFVKKLR
TLTEQQREALSHDFASLNLSKYIGEAVSSMVEAKLKLSDVSCAVRLCSLFHLRYAEFAPL
LLQAWRKHLDARREEKTPNVSKLRTDLRFIAELTAVALFTDKEGLSLMYEQLKGITGVDR
ETHTHVSVVISFCKHCGDDIAGLMPRRVKAASDKFGLAFPPSEIITTEKQQPFQNLLREY
FTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQTLADL
LDEIMPELPLDKSVQEEHGPGIDIFTPGKPGEFDLEGGIWEDEDARNFYENLVDLKAFVP
AILFKDNDKSGQGKQGDDGKGVCVPDKDKDKDSKDDKDIKDIKDITSTEELELELEALDI
ADDPLELEPTDAEAENEELAKKLLDEQEQEDEEASTGSHLKLIVDAFIQQLPNCVNRDLI
DKAAMDFCMNMNTKSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSML
KGDFRFHIRKKDQINIETKNKTVRFIGELAKFKMFTKTDTLHCLKMLLSDFSHHHIEMAC
TLLETCGHFLFRSPESHLRTSVLLEQMMRKKQAQHLDARYITMVENAYYYCNPPPMEKTV
RKKRPPLQEYIRKLLYKDLSKVTTEKVLRQMRKLPWLDAETKAYLVCCMVNIWNVKYNSI
HCVANLLAGLVAYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRVSSAKFLGELYNYRMV
ESAVIFRTLFSFISFGVNTDGTASPLDPPEHHFRIRLVCTLLDTCGQYFDRGSSKRKLDC
FLIYFQRYVWWKKSLDVWTKDHPFPIDIDYMISDMLELLRPKMRLCTSLEEATRQVTELE
KEVMIKLGLAMEKDGRCPSSLGEGEDEDDDDDDEEGGAETEEQSGNESEMNEQEEGSENE
EEEREEEEEENTDYLTDSNKENETDDETNEVTIRGGGLKHVACAEDEDFIQALDKMMLEN
LQQRSGEAVKVHQLDVAIPLQLKSQLKKGPPPVEGEGDAEINDTMQFVMLTRKGNKQQYK
ILNVPLSSHLAANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQDGAEMLQSLAQRPAP
ANTNRERRPRYQHPKGAPNADLIFKTGGRQDARARRRL
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgaacgcaagaagtccgtgaatatggaagagaaagagccaggaaacagtagc
aaggagaaagaaagggagagagagggcgaccggcgacccacctcgtcccgggaaaaaggg
aaagacgagcccaaaacaggcaagaaggatggaggcaaagcagcagaggagaagaagagg
aggatcgaagacgagaagagaaagaaggaagaaaaggagcgcaagaagaaagaggaggag
aaactaaaagcagaggaagagcagaagaaaaaggaggaggaggagaaaaggctgcaggaa
gaagaggagaggaagaagcaagaggaggaagcaaagagactgaaggaggaggaggcagct
ttgctcaaggagacagaggaggcgcagcagctgcaccaggagtcctgggagcgccaccac
acgcgcaaggagctgcgcgcgcgcaaccagagcgcccccgaggggcggcccgaggaggcc
ttcttcggacgcctggactcgagcctgaagaagaacacggcgttcgtgaagaagctgcgc
acgctgacggagcagcaacgcgaggcgctctcgcacgacttcgccagcctcaacctgagc
aagtacatcggcgaggccgtcagctctatggtggaggccaagctcaagctgtcggacgtg
agctgcgccgtgcgcctgtgctcgctgttccacctccgctacgccgagttcgcgccgctc
ctgctgcaggcctggcgcaagcacctggacgcgcgccgtgaggagaagacgcccaacgtc
agcaagctgcgcaccgacctccgcttcatcgccgagctcaccgccgtcgccctcttcacc
gacaaggagggcctgtcgctcatgtacgagcagctgaagggcatcaccggcgtcgatcgc
gagacacacacgcacgtctccgtggtgatcagcttctgcaagcactgcggcgacgacatc
gccgggctgatgccgcgccgcgtcaaggcagcgtctgacaaattcggcctggcgttcccg
ccaagcgagatcatcaccaccgagaagcagcagcccttccagaaccttctgcgcgagtat
ttcacctcgctcaccaagcacctgaagaaagaccaccgcgagctgcagaacattgagaga
cagaaccggaggatcctgcactcgaagggggagttgagtgaggacaggcacaagcagtat
gaggagtttgccacctcctaccagaagctgctggccaacacacagactctggccgacctg
ctggacgagatcatgcctgagctgcccctggacaaaagcgtgcaggaggaacacgggcct
ggcatcgacatcttcacccctggcaagcccggggagtttgacctggagggtggcatctgg
gaggacgaggacgctagaaacttctacgagaacctggtcgacctcaaggccttcgtccca
gccattctcttcaaggataatgacaagagtggccagggcaagcaaggagatgatggcaaa
ggcgtgtgtgttccagataaagataaagataaagacagcaaggacgataaagacatcaag
gacattaaggatatcaccagcacagaggagctggagttggaactggaggctctggacatc
gctgatgaccccttagagctggaacccacagacgccgaggccgagaacgaggaactcgcc
aagaaactactggacgagcaagaacaagaggatgaagaagccagcacaggctcccatttg
aagctcattgtagatgccttcatccagcagcttcctaactgtgttaacagagatctgata
gacaaggccgccatggatttctgcatgaacatgaacacaaaatccaatcgcaggaaactg
gtccgagcactcttcactgtacccagacaaaggctggacttgctgcccttctactcgcgg
ctggtggctaccctgcatccctgcatgtcagacgtggctgaggacctgtgctccatgctc
aaaggggacttcaggttccacatccgtaagaaggaccagatcaacattgagaccaagaac
aagaccgtcaggttcatcggagagctggctaagttcaagatgttcaccaaaacagacaca
ctgcactgcctgaagatgctgctgtctgatttctctcatcaccacatagagatggcctgc
accctactggagacctgcggacacttcctgttcaggtcaccagagtctcacctgaggacc
agcgtacttctggaacaaatgatgcgtaaaaagcaggcgcagcacctggacgctcggtac
atcaccatggtggagaacgcctactactactgcaacccccctcccatggagaagaccgtg
cgcaagaagagaccccccctccaggagtacatccgcaagctgctctacaaggacctgtca
aaggtcaccacagagaaggtgttgcgtcagatgcgtaagcttccctggctggacgcggag
accaaggcctacctggtgtgctgcatggtcaacatctggaacgtcaagtacaacagcatc
cactgcgtggccaacctgctggccggactggtggcctaccaggaggatgttggcatacat
gtagtggacggggtgctcgaggacatacgcctgggaatggaggtgaaccagcccaagttt
aaccagcggcgtgtgagcagtgccaagttcctgggcgagctctacaactaccgcatggtg
gagtcggccgtcatcttccgcacgctcttctccttcatctcgttcggcgtgaacacggac
ggcacggcctcccccctcgacccccccgagcaccacttccgcatccgcctcgtctgcacc
ctgctcgacacctgcggccagtacttcgaccgtggctccagcaagaggaagctcgactgc
ttcctcatctacttccagaggtatgtctggtggaagaagagtctggacgtgtggacgaag
gaccacccattccccatagacattgactacatgatcagcgacatgctggagctcctgagg
cccaagatgaggctctgcacctcactggaggaggccacgagacaggtcacagagttggag
aaggaggtcatgattaaactgggcttagcgatggagaaggatggccgttgccccagttct
ttgggtgagggagaggacgaagatgatgatgatgacgatgaggagggtggggcagagaca
gaggagcagtctggaaacgagagcgagatgaacgagcaagaggagggatctgagaatgag
gaggaagagcgagaggaagaggaagaggagaacacagactacctgaccgactccaacaaa
gagaatgaaacggatgatgaaaccaatgaggttactatccgtggaggtggcttgaagcac
gttgcctgtgctgaagatgaggatttcatccaggccctagataagatgatgttggagaac
ctgcagcagcgcagtggagaggctgtgaaagtgcaccagctggacgttgcgatccccctg
cagctgaagagccagctgaagaaaggccccccccctgttgaaggagagggggacgcagag
atcaatgacaccatgcagttcgtcatgctcactcgcaagggcaacaagcagcagtataag
atcttgaacgtgccgctgtcgtcccatctggctgccaaccacttcaaccagcagcaggcc
gagcaggaggagcgcatgcgcatgaagaagctcaccctggacatcaacgagcgtcaggag
caggaggactaccaggatggtgcagagatgctgcagtccctggcccagcgccctgcgccg
gccaacaccaaccgtgagcgacggcctcgctaccagcaccccaaaggggcccccaatgct
gacctcatcttcaaaacagggggcaggcaggatgctagggccaggcgtcgactctga
DBGET
integrated database retrieval system
