Clupea harengus (Atlantic herring): 105898662 Help Entry 105898662         CDS       T09045                                  Symbol ptch2 Name (RefSeq) protein patched homolog 1   KO K11101   patched 2 Organism char  Clupea harengus (Atlantic herring) Pathway char04340   Hedgehog signaling pathway Brite KEGG Orthology (KO) [BR:char00001]  09130 Environmental Information Processing   09132 Signal transduction    04340 Hedgehog signaling pathway     105898662 (ptch2) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Sterol-sensing Patched Motif Other DBs NCBI-GeneID:  105898662 NCBI-ProteinID:  XP_012681164 Ensembl:  ENSCHAG00000022722 UniProt:  A0A6P3VV17 LinkDB All DBs Position 25:complement(13276293..13309004) Genome browser AA seq 1456 aa AA seqDB search MASDPRVPGAGVFGDLPPSYTRSPPAVSSDLRRPSYCHAAFALKQISKGKAVGQKAPLWI RARFQALLFTLGCHIQRHCGKVLFIGLLVFGAFSVGLRVAAIETDIEQLWVEAGSRVSRE LRYTKEKQGEESVFTSQMLIQTPKQEGTNILTQESLLLHLEAALSASKVQVSLYGKSWDL NKICFKSGVPIIENVMIERMIDKLFPCMIISPLDCFWEGSKMQGGSAYLPGMPDIQWMNL DPLKLMEELSQFTSLEGFKEMLDKAQVGHAYMNRPCLNPNDPDCPNSAPNKEQRQSPDIA SELQGGCHGFSKKFMHWQEELILGGRAKDTQNALQSAEALQTMFLLMSPKQLYEHFKDDY EIHDINWNEDKATAILESWQRKFVEVAHQSIPKNSSSSVNAFSTTTLNDIMKSFSDVSVI RVAGGYLLMLAYACVTMLRWDCAKSQGAVGLAGVLLVALSVAAGLGLCSLLGLSFNAATT QVLPFLALGIGVDDMFLLAHSFTEAASNIPFKERTGDCLRRTGTSVALTSINNMIAFFMA ALVPIPALRAFSMQAAIVVVFNFGMVLLIFPAILSLDLHRREDKRLDILCCFYSPCSSRV IQIQPQEFSGAADSHPHSPPTPTYTGSTITTSTHITTTVQAFTQCDAAGQHIVTILPPTS QISTGPASVIVAPSPVAPVPAPAADPYGSQLFTPSSSTRDLLAQVEDPKEGRDCVPLPFF RWNLSSFARKKYAPLLLKPETKTVVVVMFVALLSLSLYGTTMVHDGLYLTDIVPRDTKEY DFIAAQFKYFSFYNMYLVTMDGFDYARSQRELLQIHNGFNSVKYVVRDSDQRLPRMWLHF FQDWLRGLQATFDADWEAGRITYDSYRNGTEDGALAYKLLIQTGSKKDPFNYSQLTSRQL VDEDGLIPAEVFYIYLTVWVSNDPLGYAASQANFYPHPREWIHDKYDTTGENLRIPAAEP LEFAQFPFYLNGLRQASDFVEAIESVRAICEEFNRKGINNYPNGYPFLFWEQYIGLRHWF LLAVSVVLACTFLVCAILLLNPWTAGMIVFILAMMTVELFGIMGLIGIKLSAIPVVILIA SVGIGVEFTVHIALGFLTAIGDRNTRAAVALEHMFAPVMDGAISTLLGVLMLAGSEFDFI MRYFFAVLAILTLLGVLNGLVLLPVLLSLMGPPAEVTPANNASRMATPSPEPLPPPMSHH SYYAGHNPRGTRQQAFSESSDSEYYSETTTTSGIGEEEYKYCDRSAYITPPTVAPTSRIL LEASKNPSFPKLTVVKPYGENTGTQKDQMSESAQNAVNSVSSQISRWDSKHEYQGPRRQH LPSSRAHCPGRTNHSGLGSQQCRGPHQNRTNVPAHGTGILQRPSNAVTMVTATASVTVAV HPSLPGSYQGYMHEGFEDTELDSFEETKRTSQSFGKATQSFKTESMELQDLESVEKNQNE ANQALGGPRIRAAKDC NT seq 4371 nt NT seq  +upstreamnt  +downstreamnt atggcctcggatcccagagtccccggggccggtgtttttggagatttaccccccagttat acgcgttccccgccggctgtgagctcagacctccgaagacctagttactgccacgccgca ttcgcgttaaaacagatttctaaggggaaggctgtggggcagaaagcgccgctttggatt cgggcgagattccaggccctcctctttactctgggctgtcacatccagcgacattgtgga aaagtccttttcattggactgcttgtgttcggtgccttttctgtgggtttgcgggtcgct gccatcgaaacggacatcgagcagctatgggtggaagctggaagccgagtgagccgtgaa ctgcgctacacgaaggagaagcaaggagaagagtccgtgttcacctcacagatgctcata caaacgcctaaacaggaaggaaccaatattcttacccaggagtccttgctacttcacctg gaggcagcgttgtctgccagcaaggtccaggtgtccctgtacggaaagtcatgggatcta aacaaaatctgcttcaagtctggagttccaatcatagaaaatgtcatgatcgaaaggatg attgacaagcttttcccgtgtatgattataagccctctggactgtttctgggaaggctcc aagatgcaaggaggttcagcctacttaccggggatgcctgacatccagtggatgaacctg gaccctctgaagctgatggaggagctgagccagttcacctctctggagggcttcaaggag atgcttgacaaggcccaggtgggccacgcctacatgaacaggccctgcctcaaccccaat gaccccgactgccccaacagcgcccccaacaaggagcagcgccagagtcccgacattgcc tctgaactgcagggcggttgccatggtttctcgaaaaagttcatgcactggcaggaggaa ctgatcctgggtggcagagcaaaggatacccagaatgccttgcagagcgctgaagctctc cagaccatgttcctcctcatgagccccaagcagctttatgagcactttaaggacgactac gagatccacgacatcaactggaatgaagacaaggccacagctatcctggagtcctggcag aggaagtttgttgaggtggcccatcagagcattcccaagaactcctcgtccagtgtgaac gccttctccaccaccaccctcaacgacatcatgaagtccttctccgacgtcagtgttatc cgcgtggccggcggctacctgctcatgttggcctacgcctgcgtgaccatgctgcgttgg gactgtgccaagtcccagggggccgtggggctggccggggtgctgctggtggctctgtca gtggcggccgggctgggactgtgctctctgctgggtctgtccttcaatgcagccacaaca caggtgcttccgtttctggccttggggattggagtggatgacatgttcctgctggctcac tccttcacggaggctgcttccaacatccccttcaaggagcggactggagactgcctgcgc aggactggcaccagcgtggccctgacctccatcaacaacatgatcgccttcttcatggct gccctggtgcccatcccagccctgagagcgttctccatgcaggctgccattgtggtggtg ttcaactttgggatggttctgctcatctttcctgctatcttgagcttggacctgcaccgc cgtgaggacaaacgtctggacatcctgtgctgtttctacagcccttgctcctcacgagtg attcagatccagccgcaggagttctccggcgccgctgacagccacccgcactcccctcct acccctacctacacaggctccaccatcaccaccagcacccacatcaccaccaccgtgcag gccttcacccagtgtgacgccgccggccagcacatcgtcaccatcctgccccccacctcc cagatctccactggccccgcctcggtcatcgtcgccccctcgccagtcgctccggtcccg gccccggctgccgacccctacggctcccagctcttcaccccctccagctccaccagggac ctgctggcccaggtggaggaccccaaggagggccgcgactgcgtgccgcttccctttttc cgctggaacctgtccagcttcgcccggaagaagtacgcccctctgctgctgaagcccgag accaagacggtagtggtggtgatgttcgtggccctgcttagcctcagcctctacggcacc accatggtacacgacggactctacctgactgacatcgtgccgcgcgacaccaaggagtac gacttcatcgcggcccagttcaagtacttttccttttacaacatgtacctggtcaccatg gacggctttgactacgcccgctcccaacgggagctccttcagatccacaacggcttcaac tcggtgaagtacgtggtgcgggacagcgaccagagactaccccgcatgtggctccatttc ttccaggactggctgcgaggactgcaggccacattcgacgcagactgggaggctggcagg atcacttacgatagctaccgcaacggaaccgaggacggagctctggcctacaagctcctc atccaaaccggctccaagaaggaccctttcaactacagccagttgacgtcccgtcagctg gtagatgaggatggcctgatcccggcagaggtcttctacatctacctcaccgtgtgggtc agcaatgaccccctgggctacgccgcctcacaggccaacttctatccccaccctcgcgag tggatccacgacaaatacgacaccacgggcgagaacctgcgcatccccgctgccgagccg ctggagtttgcccagttccctttctacctgaacggcctgaggcaggcgtccgacttcgtg gaggccatcgagagcgtgcgcgccatctgtgaggagttcaaccggaagggcatcaacaac taccccaacggctacccctttctgttctgggagcagtacatcgggctacgccactggttc ctgctggccgtcagcgtcgtgctggcctgcaccttcctggtgtgcgccatcctcctgctc aacccctggaccgcaggcatgattgtttttatcttggccatgatgactgtggagctcttc ggcatcatgggtctgattggcatcaagctcagcgccatccccgtggtcatcctgatcgct tccgttggcatcggagtggaattcaccgttcacatcgcactgggcttcctcaccgccatc ggagacaggaacacccgcgcggccgtggccctggagcacatgttcgctcccgtgatggac ggcgccatctccactctgctgggggtgctcatgttggccggctccgagtttgacttcatc atgagatacttctttgccgtgttggccatcctgacgctgctgggcgtcctgaacggcctc gtgctgctgcctgtgctgctctctctcatgggtccgcccgctgaagtcactcccgccaac aacgccagccgcatggccaccccttccccggagcccctccctcctcccatgagccaccac agctactacgccgggcacaatcccaggggcacgcgtcagcaggctttctcggagtcgtcc gactcggagtactactccgagacgaccaccacgtctgggatcggcgaggaggagtacaag tactgcgacaggagcgcatacatcaccccgccgaccgtcgcgccaacctcgcgcatcctg cttgaggcgagcaagaaccccagcttccccaaactcacagtagtgaagccttacggtgaa aatacaggcactcagaaggatcagatgagcgagtccgcccagaacgcagtgaactcggtc agctctcagatcagcagatgggacagcaagcacgagtaccagggacccaggaggcaacat ttacccagcagcagggcccactgccctgggaggactaatcactcgggcctcgggtcccag cagtgcagagggccgcatcaaaacaggactaatgttccggcccacggcaccggaatactg cagcggcccagcaatgctgttaccatggttaccgccacagcctctgtgacggtggcagtg caccccagtttgccggggtcgtaccagggttacatgcacgagggctttgaagacactgag ttggactcttttgaggagacaaaaaggacttcgcagtcatttgggaaagccacacaatct ttcaagacagagtctatggaactccaagacctggaatctgtagaaaagaaccagaatgaa gctaaccaggctctaggtggtcctcggatccgagcagccaaagattgctag

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