Clupea harengus (Atlantic herring): 105898759
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Entry
105898759 CDS
T09045
Symbol
smarca4a
Name
(RefSeq) SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
105898759 (smarca4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
char03021
]
105898759 (smarca4a)
03036 Chromosome and associated proteins [BR:
char03036
]
105898759 (smarca4a)
Transcription machinery [BR:
char03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
105898759 (smarca4a)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
105898759 (smarca4a)
Chromatin remodeling factors
BAF complex
105898759 (smarca4a)
PBAF complex
105898759 (smarca4a)
GBAF(ncBAF) complex
105898759 (smarca4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
HSA
Bromodomain
BRK
QLQ
ResIII
HDA2-3
DEAD
DUF2009
Motif
Other DBs
NCBI-GeneID:
105898759
NCBI-ProteinID:
XP_031428672
Ensembl:
ENSCHAG00000026467
UniProt:
A0A6P8FZQ0
LinkDB
All DBs
Position
1:24579221..24598443
Genome browser
AA seq
1644 aa
AA seq
DB search
MSTPDPPMGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSSGHPMPPQG
PSGYPQENMHQMHKPMEGMHEKGMPDDPRYSQMKSMGMRPGAHSGMGPPPSPMDQHSQGY
PSPLGGSEHAPSPVPANGPPSGPMMPSGPGGVPMEGSDPQNMSQQQQQGRSGVPGGPGSS
GPGGGGQPGGPGGAGGPAGPTPFNQNQLHQLRAQIMAYKMLARGQVLPEHLQMAVQGKRP
MPGMQPQGMPNMPPSSGPGAGPGAGPGPAAANYNRPHGMVGPNMPPPGPSGVPPGMQGQP
TNGPPKSWPEGPMVNAAPPSNAPQKLIPPQPTGRPSPAPPSVQPAASPVMPPQTQSPGQP
PQPPPMMLHQKQNRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLR
TKATIELKALRLLNFQRQLRQDVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLE
KQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSITGKIQKLTKAVATYHANTEREQKK
ENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRAHKAVQAA
KDKKKKKKKKKKKPENADGQTLGPDGEPLDETSQMSDLPVKVIHMESGNILTGDEAPKSG
QLDTWLEVNPGYEVAPRSDSEDSGSEEEEEDDEDLPQTSQAPIVEKKLIPDPDIAEVDET
DVACIIENAKQDVDDEYGTAAFNRGLQSYYAVAHAVTETVDKQSSLLINGQLKQYQIKGL
EWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMELKRINGPFLIIVPLSTLSNWVYEF
DKWAPSVIKISYKGSPQARRAFVPLLRSGKFNVLLTTYEYIIKDKQVLAKLRWKYMIVDE
GHRMKNHHCKLTQVLNTHYLAPRRVLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW
FNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSA
LQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQQIEESFSEH
LGFTSGIVSGPDLYRASGKFEVLDRILPKLNVTGHKVLLFCQMTSLMTIMEDYFSYRNFK
YMRLDGTTKAEDRGTLLKNFNDPESKYFVFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ
DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE
RRAFLQAILEHEEQDESPVSIVQEEDEVPDDETVNQMIARSEEEFDHFMRMDLDRRREDA
RNPKRKPRLMEEEELPSWIIKDDAEVERLTCEEEEEKIFGRGSRARKEVDYSDSLTEKQW
LKAIEEGNLEEIEDEVRTKKTTRKRKHRDIEPGPATPSSSGGRSRDKDEDGGSTKKQKKR
GRPPAEKLSPNPQSLTKKMKKVVDAVIKYKDSVNGRQLSEVFIVLPSRKELPEYYELIRK
PVDFRKIKERIRSHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIFEDSIVLQSVFTSVRQK
IEKEEDSEGEESEEEEDDVDEGSESESRSVKVKIKLSRKEKGTERGKGRRRMGRGSRAKP
VVSDDDSEEEQEEERSGGSGSEED
NT seq
4935 nt
NT seq
+upstream
nt +downstream
nt
atgtccactcctgacccccccatgggagggacccctcgcccgggtccctccccaggtcct
gggccatctcctggggccatgctggggccgagccctggaccatctcctggatcagcccac
agcatgatgggcccgagcccagggcctccttcctcaggtcaccccatgccacctcaggga
ccctcagggtaccctcaagagaacatgcatcagatgcacaagcccatggaaggcatgcat
gagaagggcatgcctgatgacccacgctacagccagatgaagagcatgggcatgagaccc
ggtgcccatagtggcatgggccctcctcccagccccatggaccagcactcccaaggttac
ccctctcctcttgggggctctgagcacgctcccagccccgtcccagccaacggccccccc
tctggccccatgatgccctcgggcccaggcggggtgcccatggagggcagcgacccccag
aacatgtcccagcagcagcagcagggcaggagtggggtgcctggtggccctggctccagc
ggcccaggaggtgggggccagcccggcggcccaggaggtgccggcggaccagcaggaccc
acgcccttcaaccagaaccagctgcaccagctacgcgcccagatcatggcgtacaagatg
ctggcgcgtgggcaggtgctgccagagcacctacagatggcagtgcagggcaagaggccc
atgccgggaatgcagccacaaggcatgcccaacatgccaccttcctccggacccggagca
ggacctggggcaggccccgggcctgcagccgccaactacaacagacctcatggaatggtt
ggacccaacatgcctcccccaggaccctctggagtccccccaggtatgcaggggcagccc
accaatggaccgcccaaatcctggcctgagggccccatggtgaatgctgcacccccctcc
aatgccccacagaagctcatcccccctcagcccactggcaggccctcccccgcgcccccc
tcagttcagcctgctgcctcgcccgtcatgccccctcagacccagtcgcctgggcaacca
ccccagccgccacccatgatgctgcatcagaagcagaaccgcatcacgcccatccagaag
ccccgtgggcttgacccggtggaaatcctgcaggagagggagtacaggctgcaggctcgt
attgcccatcgcatccaggagctggagaacctcccaggctctctggctggagacctgagg
accaaagcgaccattgaactcaaggctctgaggttgctcaacttccagagacagctgagg
caggacgtggtggtgtgtatgcggcgtgacacggcgctggagacggccctgaatgccaag
gcctacaagcgcagcaagcggcagtccctgcgtgaggcccgcatcacagagaagctggag
aagcagcagaagatcgagcaggagcgcaagcgcagacagaagcaccaggaatacctcaac
agcatccttcagcatgccaaggacttcaaggagtaccaccgttccatcacaggcaagatc
cagaagctgaccaaagccgtggccacctaccacgccaacactgagcgcgagcagaagaaa
gagaatgagcgcatcgagaaggagagaatgaggaggctgatggctgaggatgaagagggc
taccgaaagctcatcgaccagaagaaggacaagcgcctggcctacctgctgcagcagacg
gacgagtacgtggccaacctcaccgagctggtgcgtgcacacaaggctgtccaggccgcc
aaggacaagaaaaagaagaagaagaagaagaaaaagaagccagagaatgcagatggtcag
accctgggcccagatggagagcctctggatgagaccagtcagatgagtgacctgccggtg
aaggtgatccacatggagagcggcaatatcctgactggggatgaggcccctaaatctggc
cagctggacacttggctggaggtgaaccctgggtatgaagtggcaccacgttcagacagt
gaagacagtggatcagaagaagaggaggaggacgacgaggatctgccacagacatctcag
gctcccattgtggagaagaagttgattccagacccagacatcgcggaggtggatgagacg
gacgttgcatgcatcatcgaaaacgccaagcaggacgtggacgacgagtacgggacagca
gcgttcaaccgtggcctgcagtcctactacgccgtggcccacgccgtcacagagacggtg
gataagcagtcctccctgttgatcaacggccagctcaagcagtaccagatcaagggtctg
gagtggttggtgtccctctacaacaacaacctgaacgggattctggctgatgagatgggc
ctgggaaagaccatccagaccattgctctcatcacctacctcatggagttaaagcgcatc
aacggacccttcctcatcatcgtgcccctctcaaccctctccaactgggtgtatgagttt
gacaaatgggctccatctgtgataaagatctcttacaagggatccccacaagctcgccgc
gccttcgtccccctgctgcgtagtggcaagttcaacgtgctgctcaccacgtatgagtac
atcatcaaggacaagcaagtactggccaagctccgctggaagtacatgatcgtggacgag
ggccatcgcatgaagaaccaccactgcaagctgacgcaggttctgaacacacactacctg
gccccgcggcgagtgctactcacggggacgccgctgcagaacaagctgcccgagctctgg
gccctgctcaacttcctgctgcccaccatcttcaagagctgcagcaccttcgagcagtgg
ttcaacgcgcccttcgccatgaccggagagaaggtggacctgaacgaggaggagaccatc
ctgatcatccgccgtctgcataaggtgctccgccccttcctgctgcgccggctcaagaag
gaagtggaggctcagctccccgagaaggtggagtatgtgatcaagtgcgacatgtccgcg
ctgcagagggtgctgtacagacacatgcaggccaaaggagtcctgctcaccgacggctcc
gagaaggacaagaagggcaaggggggcaccaagactctgatgaacaccatcatgcagctg
aggaagatctgcaaccacccctacatgttccagcaaatcgaggagtctttctccgagcac
ttgggtttcacctcgggcatcgtgagtgggcctgacctgtaccgtgcctctggcaagttt
gaggtactggaccggatcctgcccaagctgaacgtcaccggtcacaaggtgctgctcttc
tgtcagatgacctccctcatgaccatcatggaggactacttcagctaccgcaacttcaag
tacatgcgtctggacggaaccactaaggccgaggaccgtggcacgctgctgaagaacttt
aacgaccccgagtccaagtactttgtgttcctgctgagcaccagagctggaggcctgggc
ctgaacctgcagtcagcagataccgtcatcatcttcgacagcgactggaatccccaccag
gacctgcaggcccaggaccgcgcccatcgtatcgggcagcagaacgaggtgcgcgtgctg
cgcctctgcacggtcaacagcgtggaggagaagatcctggccgcggccaagtacaagctc
aacgtggaccagaaggtcatccaggccggcatgttcgaccagaagtcgtccagccacgag
cggcgggccttcctgcaggccatcctggagcacgaggagcaagatgagtctccggtatcg
attgtccaggaagaagatgaagtgccagatgatgagactgtaaaccagatgattgcaaga
agcgaagaggagtttgaccacttcatgcgtatggatctggaccgtcgccgcgaggacgca
cggaatcccaagcgtaaaccgcgactgatggaggaggaagagcttccctcgtggatcatc
aaggacgacgccgaggtggagcggctcacctgcgaggaggaggaggagaagatcttcggg
cgcggctcccgcgcgcgcaaggaggtggactacagcgactcgctcacagagaagcagtgg
ctcaaggccatagaggagggcaatctggaggagatagaggatgaggtgcggaccaaaaag
accactcgcaagcgcaagcaccgcgacatcgaacctggccccgccacgcccagctccagc
ggaggtcgcagcagagacaaggacgaggatggcggcagcaccaagaaacagaagaaacgc
gggcgtcccccggccgagaagctgtcccccaacccccagtccctcaccaagaagatgaag
aaggtcgtggacgctgtcatcaagtataaggacagcgtcaatggccgtcagctgagtgag
gtcttcatcgtgttgccctcccgcaaggagctgcccgagtactacgagctcatccgcaag
cctgtggacttcaggaagatcaaggagaggatccgtagccacaagtaccgcagtctgaat
gacctggagaaggacgtgatgttactctgccagaacgcccagaccttcaacctggagggc
tcactgatcttcgaagactccatcgtgctacagtcagtcttcaccagcgtgcgtcagaag
atcgagaaggaggaggacagcgagggcgaggaaagtgaagaagaggaggacgatgttgat
gaaggctccgaatcggagtcgcgctcggtgaaggtgaagattaagctgagcaggaaggag
aaggggacagagcgagggaaggggaggcggcgtatggggcgtggctcccgcgctaaacca
gtagtgagcgacgatgacagtgaggaagagcaggaagaggaacgttccggaggcagcggc
agtgaagaagattaa
DBGET
integrated database retrieval system
