Clupea harengus (Atlantic herring): 105898771
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Entry
105898771 CDS
T09045
Symbol
helz
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105898771 (helz)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
105898771 (helz)
3'-5' decay
Other 3'-5' decay factors
105898771 (helz)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
UvrD-helicase
zf-CCCH
ResIII
PAM2
PhoH
DDHD
zf_CCCH_4
AAA_16
zf-CCCH_4
CDC45
AAA_22
MDM10
DUF4471
Motif
Other DBs
NCBI-GeneID:
105898771
NCBI-ProteinID:
XP_012681287
Ensembl:
ENSCHAG00000009524
UniProt:
A0A6P3VTY8
LinkDB
All DBs
Position
1:19110754..19145948
Genome browser
AA seq
1958 aa
AA seq
DB search
MEDGRPQRSCEEAIGSLVRHDYEEAVTQSTEALLVLGPGPLGPHGAALRSRALLYRIAAL
LQLKNYDQADEDCKHVIAQELAKGDGSFRVGLQSMVLDGSLQEVSLILSKALFGEPLNGI
MTKDMTRLKMLLSEIEAANSKMPPEFTEDTEEDGKEGWQFRPPPRGITSSEEYTLCKRYL
EQGLCRYGAQCTSAHSQEELTEWQQRYASRLIRLKQQQERQSFTENYMESLIEKWINSLT
PERVLSDSLDGVSVEHSSDLSVTVTSKKSSHAWTFSLLCKPARALQRVALLYDANRPHFY
ITGVAAGDTSSLVPQDVSPGGCQEWSGGVGMVPPNGMDHCLYTVNVVFSTEIFGTFRQTV
VFDFGSEPVLTQRVLVDAASIEDLEHLMQARQQLLITAKRWDSSCKTIVEFTPNETGELE
RSLLARYQIPLSADQLFTQSVLDKGLTKDNYQARLHDLLYIEEIAQYKEVSKFNIKVSLQ
LVNSFMLTGISGGAKYAQNGQLFGRFKLTETLSEDTLAGRLVMTKVNSVLLQPLDRERSN
HPAGGSKERVYEALIEEKTKDYIFLRVCRDCCGELNLLPDRELQVELQFQLNRLPLCEMH
YALDRVKDTGLLFPDVNLTPTIPWSPNRQWDEQLDPRLNAKQKEAILAITTPLSVCLPPV
LIIGPYGTGKTFTLAQAVKHILKQPGNRVLICTHSNSAADLYIKDYLHPYVETGNPHARP
LRIYFKNRWVKTVHPLVQQYCLISNTSYTFQMPQREDVERHRVVVVTLSTSQYLCQLDLE
PGLFTHILLDEAAQAMESETIMPLALATKNTRIVLAGDHMQLSPFVYSEFARERNLHVSL
LDRLYEHYPPVDPCRILLCENYRSHEAIINYTSDLFYEGKLMASGKQPPHKDFYPLTFFT
ARGEDVQEKNSTAYYNNAEVFEIVERVEEMRRKWPVAWGKLDDGSIGVVSPYADQVFRIR
AELRKKRMPDVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRKEQLVEDSTEDLD
YGFLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWETFISICHDNNSLHGISFEQ
IKAQLEALELKKTYVLNPLAPEFIPRALRSMPPPQASSKHQHSPPKAKGTLANHSEHFAP
EGFVQSSAAVLMGNPIQAFTPPVAGGGATGSAGKSPSPVQRVDPHTGASILYVPAVYGAN
MVMPMPLPLPWPGYQSRFPMDPRLINHQAAMAAYNLNLRQPTSRASPGLYGLSHPSPLGL
TPQSSTDKELLQDANAAGKMDMNGKVEHGRLLTPERKAPELKDKQGESDQGPNRSPEAVG
PLGYPAGRLLRKDATSGTPPGPQRPLGFPHLTSQHHMPPHHHPAFPPPHAAGGGQQFQQQ
QQPPYGLPRPGPLRMPPHQGPPFPTPNAPPPTSFFLPRALQSPGLEGDSSDQPAVPEDLK
GALRAMPPSAAAAPPQPQQLAVQHAHAQHAHQHAHTHHQNMHVNSYGEDALDSGMGEGLD
PQASSSLELMSQQARLGQWGEHAPFLPPGMAAFPMQPLSHLGQPGMRLPQQLIRTGWGLP
PPQEEDGPPRAPLTSRYPGLLREMSAQEHYEQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
QQQQQQQREPPDMPPPQSRLLQYRQQQVRGAPGGEMPSPSHSSASSAGPFHGYPDQGRGD
MQQAYPPHQAFPLPPDHQGHPAPLPLKYLLPEAAWGHPGLAQGHMLGQHGLPLGLQSLGP
RPEHSPLLLQQQHKQQQQQQQQQATHTALQSLEEYEPRGPGRPLYQRRISSSSPQSYPDS
PQDPQPPAPPCRFPPAELWPSSGPASLHNIPCNGASPLAPHRDNIVTKAMNTAEDGGKAE
VLQAAPHPPSTTSLQHHGQFPPLLPSKQTPPDPGGGGSPSPAGPHKTPTMSYASALRAPP
KPRPTPEQAKKNNNPLSLLQELNIGSSNSSNGYYSYFK
NT seq
5877 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgggagaccgcagaggtcatgtgaagaagccattggatcacttgtgagacat
gattatgaggaggcggtgacccagagcaccgaagcgctgttggtgctcgggccggggccc
ctgggcccccacggggccgcattgcgctcgcgtgctctgctgtacagaatcgctgctctc
ctacagctgaagaactacgatcaggcggatgaggactgcaaacatgtcattgcccaggag
ctggccaagggggatggttctttcagggtgggactccagagcatggtattggacgggagc
ctgcaggaggtgtccctcatcttgtccaaggccctgttcggggagcctctgaacggaatc
atgacaaaagacatgaccagattgaaaatgctgctctctgaaattgaggcagcgaacagt
aaaatgccgccagaatttacagaagacaccgaggaagatgggaaggagggatggcagttt
cgccctccacctcgggggatcaccagcagtgaagagtataccctttgtaaaaggtacctg
gagcagggcctgtgtcgctatggcgcccagtgcacgtcggcccactcgcaggaagagttg
acggagtggcagcagcggtacgcctcgcgcctcatccggctcaagcagcagcaggagagg
cagagcttcaccgagaactacatggagtcgctcatcgagaagtggatcaactccctaaca
cccgagagagtgttgagtgacagtttagacggcgtcagcgtcgagcacagctcagacctg
tcagtcactgtcacctccaaaaagtcatctcacgcatggaccttctctcttctctgtaag
cctgcccgcgctttacagcgtgtggcactgctctacgacgccaaccgcccacacttctat
attacgggggtggcggccggcgacacctcctctctggtgccccaggacgtgtccccaggg
gggtgccaggagtggagcggcggtgttggtatggtgccgcccaacggcatggaccattgc
ctgtacacggtgaacgttgtcttcagcacagagatcttcggaaccttccggcagactgtg
gtgttcgacttcggctccgagcccgtgctgacgcagagggtattggtcgacgcagcctct
atagaagacctggagcacctgatgcaggcgcggcagcagctgctgatcactgccaagcgc
tgggactcgtcctgcaagaccatcgtggagttcacgcccaacgagacgggcgagctggag
cgcagcctgttggcccgctaccagatcccgctgtccgccgaccagctcttcacccagtcc
gtgctggacaagggcctcaccaaggacaactaccaggcccgcctgcacgacctgctctac
atcgaggagatcgcccagtacaaggaagtcagcaagttcaacattaaggtgagccttcag
ctggtcaacagcttcatgctgacgggcatctcgggtggagccaagtatgcccagaacggg
cagctctttggccgcttcaagctgacggagacgctgtccgaggacacactggctggccgg
ctggtcatgaccaaggtcaactcagtgctgctgcagccgttggaccgcgagcgcagtaac
catccagcaggtggcagcaaagagcgtgtgtacgaggcactgatcgaggagaagaccaag
gattacatcttcctgcgcgtctgcagggactgctgtggggagctcaacctcctgcctgac
cgcgagctacaggtggagctgcagtttcagctgaaccggctgccactgtgcgagatgcac
tacgccctggaccgcgtcaaggacaccggtctgctcttccctgacgtcaacctcaccccc
accatcccctggagccccaacaggcaatgggacgagcagctggacccccggctgaacgcc
aagcagaaggaggccatcctggccatcaccacccccctgtctgtgtgtctgccccccgtg
ctcatcatcggcccctacggcacgggcaagaccttcaccctcgcccaggccgtcaagcac
atcctcaagcagcccggcaacagggttctcatctgcacccattccaacagtgctgcagat
ctctacatcaaggactacctgcacccttatgtagagacaggcaacccccacgctcgcccc
ctcaggatttactttaagaaccgctgggtgaagacggtgcatcctctggtgcagcagtac
tgcctcatctccaacacgagctacacctttcagatgccccagagggaggacgtggagcgc
caccgggtggtggtggtgactctcagcacctcgcagtacctctgccagctggacctagag
ccaggtctcttcacccacatcctgctggacgaggctgcccaggccatggagagcgagacc
atcatgcccctggccctggccaccaagaacacccggatagtgctggcaggagatcacatg
cagctcagcccgtttgtatacagtgagtttgcccgggagcgtaacctgcatgtgtctctg
ctggaccggctgtatgagcactacccgcccgtggacccgtgccgcatcctgctgtgtgag
aattaccgctcccacgaggccatcatcaactacacgtcagacctgttctacgagggcaag
ctgatggccagtgggaagcagcccccgcacaaggacttctacccgctgaccttcttcacc
gcgcgaggcgaggatgtgcaggagaagaacagcacggcgtactacaacaacgccgaggtg
tttgagatcgtggagcgcgtggaggagatgcggcggaagtggccagtggcctggggcaag
ctggacgacggcagcatcggcgtggtgtcaccgtatgccgaccaggttttccgcatccgc
gccgagctgcgcaagaagaggatgcctgacgtcagtgtggagagggtgctcaacgtgcag
ggcaaacagttccgggtgctgttcctgagcacggtccgcacgcgccacacgtgcaagcac
aagcagacggccatcaaacgcaaggagcagctggtggaagattctaccgaggacctggac
tacggtttcctgtccaactacaagctgctcaacacggccatcacccgcgcccagtccctg
gtggccgtggtgggagaccccattgccctctgctcggtggggcgctgcagaaagttctgg
gagacgtttatctccatctgccatgacaacaacagcctgcacggcatctccttcgagcag
atcaaggcccagctggaggcactggagctgaagaagacctacgtgctcaaccccctggcc
cctgagttcatcccccgcgccctccgctccatgcccccgccgcaggcctccagcaagcac
cagcactctcctcccaaggccaaggggacactggcgaaccactcggagcacttcgcacca
gaagggttcgttcagtccagtgctgctgttctcatgggaaaccccatccaggcgtttacc
ccaccggtggctggtggaggggccacaggctccgcagggaagtcccccagcccagtccag
agggtggacccccacacgggggcctccatcctctacgtgcctgcggtctacggggccaac
atggtcatgcccatgcctttacctctcccctggccgggctaccagagccgcttccccatg
gatcccaggctgatcaaccaccaggcagccatggccgcctacaacctgaaccttcgccag
ccgaccagtcgagcttctccgggcctgtacggcctcagccacccctcccccctcggcctc
acgccccagtccagcacagacaaggagctcctgcaagacgccaatgccgcgggtaaaatg
gacatgaatgggaaggtggagcacggccgcctcctgaccccggagaggaaagctcctgag
ctgaaggacaagcagggagagtctgaccaggggcccaacaggagccccgaagcagtcggc
cccctgggctaccccgccgggcgcctcctccgcaaagacgccacttccggcacgcccccg
ggcccccagaggcccctgggcttcccccacctgacctcccagcaccacatgcccccgcac
caccacccggcgttcccccctccgcacgcggccggcggcggccagcagttccagcagcag
caacagccgccctacggcctgccccgcccaggcccgctgcgcatgcccccccaccagggc
ccgcccttccccacgcccaacgcccctccccccacctccttcttcctcccgcgggccctc
cagtcgccggggctggagggggactcctccgatcagcctgccgtgcccgaggacctgaag
ggggcgctgagagcgatgcccccatctgcagccgcagcaccgccgcaaccgcagcagctc
gctgtgcagcacgcacacgcccagcacgctcaccagcatgcacacacacaccatcagaac
atgcacgtcaacagctacggggaggacgctctggattctggaatgggtgagggactcgac
ccccaggcctcgtccagtctggagctgatgtcccagcaggctcggctgggccagtggggc
gagcacgcccccttcctgcccccgggcatggccgccttccccatgcagcccctctcccac
ctggggcagccaggcatgcggctcccccagcagctcatcaggacaggctggggcctcccg
cccccgcaagaggaggacggcccacccagagcgcctctcaccagcaggtaccccgggctg
ctgcgtgagatgtctgcacaggagcattatgagcagcagcagcagcaacaacagcagcag
caacaacagcagcagcagcagcagcaacaacaacaacagcagcaacaacaacagcagcag
cagcaacaacagcagcagcagcgtgagccccccgacatgcccccccctcagtctcgcctg
ctgcagtaccgccagcagcaggtgcgtggagccccaggcggggagatgccctcgccctcc
cactcctccgcctcctcggctggccccttccacggctacccggatcagggccgcggcgac
atgcagcaggcctaccccccccaccaggccttccccctgcccccagaccaccagggccac
cctgcgcccctgcctctcaagtacctgctgccggaggcggcgtgggggcacccgggtctg
gctcagggccacatgctgggtcagcacggcctgcctctgggcctccagagcctggggccg
cggcccgagcacagccctctcctgctgcagcagcagcataagcaacagcagcagcagcaa
caacaacaggccacacacactgccctgcagagcttagaagagtatgaaccccggggtccc
ggccggcccctttaccagcggcggatctcgtccagctctccccagtcgtaccctgacagc
cctcaggacccacagccccccgcgcccccctgccggttccctcccgccgagctgtggccc
tccagcggccccgcctccctccacaacattccatgcaacggagcgagccccctggcccct
cacagggacaacatagttactaaggccatgaataccgcggaggatggtgggaaggcggag
gtcctccaggcggccccacaccctcccagcaccacgtctctgcagcatcatggacagttc
cctccgctcctgcccagcaagcaaacccctcctgacccggggggagggggcagccccagc
cccgccgggccccacaagacccccaccatgtcgtacgccagcgccctgcgggccccccca
aaaccacggcccacccccgagcaggccaagaaaaacaacaaccccctgtctctgttacag
gagcttaacataggcagttcaaacagtagcaatgggtattactcctattttaaataa
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