Clupea harengus (Atlantic herring): 105898794
Help
Entry
105898794 CDS
T09045
Symbol
ddx39ab
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
char03041
]
105898794 (ddx39ab)
Enzymes [BR:
char01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105898794 (ddx39ab)
Spliceosome [BR:
char03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
105898794 (ddx39ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
105898794
NCBI-ProteinID:
XP_012681326
Ensembl:
ENSCHAG00000011776
UniProt:
A0A6P3VVA3
LinkDB
All DBs
Position
1:24409155..24413911
Genome browser
AA seq
427 aa
AA seq
DB search
MAENDVDNELLDYEDDEEQQVAPETVAPAGKKEVKGSYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCH
TRELAFQISKEYERFSKYMSTVKCAVFFGGLSIKKDEEVLRKNCPHIVVGTPGRTLALIR
NKNLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQVMMFSATLSKEIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCM
ALAQLLVEQNFPAIAIHSSMVQAERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDETDAKTLNDVQDRFEVNVAELPDEIDIS
SYIDQSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggctgagaatgatgttgacaacgagctgctcgactatgaagatgacgaggagcagcag
gtcgccccagagacagttgcacccgctggcaagaaggaggtgaagggctcctacgtctcc
atccacagctctggcttcagggacttcctcctcaagcctgagctgctccgggccatcgtg
gactgcggttttgagcatccgtctgaagttcaacacgagtgtatcccacaggccattctg
ggtatggatattttgtgccaggccaagtctggtatgggaaagactgccgtgtttgttctt
gctacgctacagcagatagagcctgtagatgggcaggtgtcggttcttgtgatgtgccac
acacgtgagctggctttccagatcagcaaagagtatgagcgtttctccaagtacatgtcc
actgtgaagtgcgctgtgttctttggtggcctctctatcaagaaggatgaggaggttctc
cgcaagaactgtccccacatcgtggtgggcacacctggccgtactcttgccctcattcgc
aacaagaacctcaacctgaagaatgtcaaacactttgtcctagatgagtgcgacaagatg
ttggaacagctagacatgaggcgtgatgtgcaggagattttccggctcacaccccatgag
aagcaggtcatgatgttcagcgccacgctcagcaaggagatcagacctgtctgccgcaag
ttcatgcaggatcccatggaggtgtttgtggatgatgagaccaagctgactctgcacggc
ttgcagcagtactattgcaagctgaaggacagtgagaagaaccgcaagctctttgacctc
ctggatgtgctggagttcaaccaggtggtgatctttgtgaagtctgtgcagcgctgcatg
gctcttgcccagctgctggttgagcagaacttccctgccatcgccattcacagcagcatg
gtccaggctgagaggctgtcacggtaccagcagttcaaggacttccagagacggatactg
gtggccaccaacctatttggtcgtgggatggatattgagcgagttaatattgtcttcaac
tacgacatgccagaggactctgatacttatctgcacagggtggctcgtgcaggcagattt
ggcacgaagggcttggctgtaacctttgtgtctgacgagaccgacgccaagacactgaac
gatgtgcaggaccgctttgaagtcaacgttgctgagctgccagatgagattgatatctcc
tcatacattgaccagtccagatga
DBGET
integrated database retrieval system
