Clupea harengus (Atlantic herring): 105899009
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Entry
105899009 CDS
T09045
Symbol
ube4b
Name
(RefSeq) ubiquitin conjugation factor E4 B isoform X1
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04120
Ubiquitin mediated proteolysis
char04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
105899009 (ube4b)
04120 Ubiquitin mediated proteolysis
105899009 (ube4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105899009 (ube4b)
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105899009 (ube4b)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
U-box type E3
105899009 (ube4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
105899009
NCBI-ProteinID:
XP_012681583
Ensembl:
ENSCHAG00000013830
UniProt:
A0A6P3VUE1
LinkDB
All DBs
Position
4:13005528..13030146
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AA seq
1359 aa
AA seq
DB search
MEELSADEIRRRRLARLAGGQTSQPSTPLSTPLTSPQRETPPGPLPGPSGAPPQPMPSAP
SHTLGLNTQSITTPATSPMGASGVAYRSQSSEGVSSLSSSPSNSLETQSQTLSRSQSMDI
DTASCEKSMSQVDVDSGIENMEVEDSDRREKRNLTEKESSSNPDVSEEEALQLICKILRV
SWKEQDRDVIFLPALAAEFQQKNPKDVYSDFKDLIGQILMEVLMMSTQARVHNPFASLTA
TSQPITAAKSPDHHLTLQPPSSQGSSPMMPCAGSFGASSLSSLYGCSPHPLALNPARMSA
PSSASTPSSATTPTSPLSPTDPPPLRPALGSPTPPLPISQRYRPYSLNSPWASTSTIPPS
PRSTGPLSPGQGPSFSPLPASLSSPQQVHPSSMSLPLLPPSSPSARARRTALAARMPSSP
LSLLFFALSDMSPNSSDEELEEEEEDFSRVQFGSSLGASGGVSVSDSASDRFTIEACKET
EMLNYLIERFDSVGMEERKAPKICSQPCVSQLLSNIRSQCISHAALVLQGALTQPRAPLQ
SSLLVPYMLCRNLPYGFILELLRMTHQEEEVFKQIFVPILQGLALAVKECSFDSDNFKYP
LMALAELCEIKFGKTHPVCNLITYLPLWCPGPLSPAGGREVQRLSFLGVFFSLSVFAEDD
TKVGDKYFSGPAITMENTRVVSQSLQHYLESARGDLFKILHNILLNGETREAALSYMAAL
VNRNVKKAQMQTDDKMVSTDGCMLNFLWVLQQLSMKIKLETVDPFYIFHPKCRLQVSTEE
TRLKATMEELKGWLGELHEIPSKFAEPKFPTECFFLTLHAHHLSILPGCRRYIRRLRAIR
DLNRTVEELKNSESQWKDLPLASRHREMLKRCKTQLKKLVRAKACADAGLLDENLLRRCL
QFYSMVIQLVLRLVDPAYPNMTLPLNPDIPKSFAALPEFYIEDVAEFLLFIVQYSPQVLY
EPCTQDIVTFLIVFICSQNYIRNPYLIAKLVEVLFVTNPAVQPRTQRFFEMMENHPIAIN
QLVPALMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFLEEFNSGKQFV
RYINMLINDTTFLLDESLESLKRIHEIQEEMKNKEQWDQLPREQQQSRQSQLTQDERVSR
SYLALATETVDMFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKY
GFEPKKLLDQLTDIYLQLDCARFAKAIADDTRSYSRELFEEVISKMRKAGIKSTIAIEKF
KLLSDKVEEIVAKNSQSEMDYSDAPDEFKDPLMDTLMSDPVILPSGCIMDRSIILRHLLN
SPTDPFNRQQLTESMLESVPELKERIQAWMREKQGGRLS
NT seq
4080 nt
NT seq
+upstream
nt +downstream
nt
atggaagagctcagtgccgacgagatccgtaggaggcgattggcacggctggcagggggg
cagacgtctcagcccagcacccctctaagcacgccccttacgtccccacagagagagacc
cctccggggcctctgcccggcccctcaggagccccgccacagcccatgccatctgctccc
tctcacactttgggcctgaacacccaaagcatcaccacccctgccacctctccgatgggt
gcctcaggggtggcgtatcgcagccagagcagcgagggcgtcagctctctgtccagctcg
ccctccaacagcctggaaacccagtcgcagaccctgtcccgatcccaaagcatggacatt
gacactgcctcctgtgaaaagagcatgtcccaggtggatgtggactcaggaatcgagaac
atggaggtcgaagacagtgatcgccgagagaagaggaacctcactgagaaggagtcctca
tccaaccctgatgtgtctgaggaggaggccctgcagctcatctgtaagatcctgcgcgtg
tcctggaaggagcaggaccgcgacgtcatcttcctcccagccctagctgccgagttccag
cagaagaacccaaaagatgtctactcggatttcaaagacctcatcggccaaatcctgatg
gaggttctcatgatgtccacccaggcgcgggtccacaacccctttgccagcctgaccgcc
acgtctcagccaatcaccgctgccaaatcccctgaccaccacttgaccctgcagccgccc
tccagccagggcagcagtcccatgatgccctgcgccggctcctttggtgccagctctcta
tccagtctgtatgggtgtagtccccatcctctggccctgaacccagcccgaatgagtgct
ccgtcgtctgcctctaccccttcctcggccactactcccacctcccccctctctcccact
gacccgccacctctccgcccagccttgggctcccccacccccccactgcccatctcccag
cgctaccggccctactccctcaactccccttgggcctccacctccaccatcccccctagc
cccaggtccactgggcccctcagtcctggacagggcccttccttcagccccctgccggcc
tccctcagttccccccagcaggtgcaccccagctccatgtccctacccctgctgccaccc
agctcacctagtgccagggctagacggactgcccttgccgccaggatgccctctagcccc
ctctccctcctcttctttgccctctccgacatgtctcccaacagtagcgatgaagaactt
gaagaggaagaggaggatttttctcgggtgcagtttggctccagcctgggtgcctcagga
ggggtgtcggtgtcggactcggccagcgaccgcttcaccatcgaggcatgcaaggagacg
gagatgctgaactacctcatcgagcgtttcgacagtgtgggcatggaggagaggaaggcc
cccaagatttgcagccagccttgtgtcagtcagctgctcagcaacattcgctcccagtgt
atttcccatgctgctctagtgctccagggcgccctcactcagcccagggctccgctgcag
tcttctctgttggtcccttacatgctgtgccggaaccttccgtacggtttcatcctggag
ctcctccgcatgactcaccaggaggaggaggtgttcaaacagatcttcgttcccatcctc
caagggctcgctttagcggtgaaagaatgttcctttgacagtgacaacttcaagtacccc
ctgatggctttagctgagctttgtgaaatcaagtttggcaagactcatcctgtgtgcaat
ttgatcacctacctcccactgtggtgtccggggccactgagcccggctgggggtcgagag
gtccagagactgtccttcctcggagtgttcttcagcctgtctgtgtttgcagaggatgac
accaaagtgggggataagtacttctcaggccctgccattacgatggagaacacgcgtgtg
gtcagccagtccctgcagcattatctggagtcagcccggggtgacctttttaaaatcctc
cacaacatcctgctgaacggggagacgagggaggccgccctcagctacatggccgctctg
gtcaaccgcaatgtgaagaaggcccagatgcagacggacgacaagatggtctccacagac
ggctgcatgctgaacttcctgtgggtgctgcagcagctgagcatgaagatcaagctggag
acggtggaccccttctatatcttccatcccaagtgtcgcctgcaagtcagcacagaggag
acccggctcaaggctacgatggaggagctcaagggctggctgggcgagctgcatgagatc
ccatctaaatttgcggagcccaagtttccaacggagtgtttcttcctgacgctgcacgca
caccacttgtccatcctgcctggctgtcgacgctacatccgcaggctccgagccatccgg
gacctgaacaggactgtggaggagctgaaaaacagcgagagccaatggaaggacttaccc
ctggccagtcgccacagggagatgctgaagagatgcaaaacccagctgaagaaactggtg
cgcgccaaggcctgtgcagacgccgggctgctggatgaaaacctgctgcgccgctgcctg
cagttctacagcatggtgatccagctcgtcctgcgcttggtggaccctgcctaccccaat
atgacgctgcctctcaacccagatattcccaagagctttgcagcgctgccagagttttac
attgaggacgtagcagagttcctgctcttcattgtgcagtactctcctcaggtgctgtac
gagccttgcactcaggacatcgtgaccttcctgatcgtcttcatctgcagtcagaactac
atccgcaacccttacctgatcgccaagctggtggaggtgctgttcgtcaccaacccggcg
gtgcagccccgcacccagcgcttcttcgagatgatggagaaccacccgatcgccatcaat
cagctggtcccagctctcatgaagttctacactgatgtggagcacaccggtgccaccagt
gagttctatgacaagtttaccatccgttaccacatcagcaccatcttcaagagcctgtgg
cagaacattgcacatcacggaaccttcctagaggagttcaactctggaaagcagtttgtg
cgctacatcaacatgctgatcaacgacaccaccttcctcctggacgagagcctggagtct
ctgaagcgcatccatgagatccaggaggagatgaagaacaaggagcagtgggatcagctg
cccagggagcagcagcagagccgccagtcacagctgacgcaggacgagcgggtctcgcgc
tcctacctggccctggccaccgagactgtagacatgttccacattctgaccaagcaggtc
cagaagcccttcctcagacccgagctgggaccccgcctggccgccatgctgaactttaac
ctccagcagctctgtggacccaagtgccgtgacctaaaggtggagaacccagagaagtac
ggcttcgagcccaagaagctcctggaccagctgactgatatctacctgcagctggactgc
gcacgcttcgccaaggccattgcagatgacacgaggtcttatagcagggagctgtttgag
gaggttatctctaagatgcgcaaggctggcatcaagtccaccatcgccattgagaagttc
aagctgctctcggataaagtggaggagatcgtggccaagaactcccagtcagagatggac
tacagtgatgcccctgacgagttcaaagaccctctgatggacaccctgatgagtgatccg
gtgattctgccgtccggctgcatcatggaccgctccatcatcctgcggcacctcctcaac
tctccgacggaccccttcaaccgtcagcaactcaccgagagcatgctggagtctgtgcca
gagctaaaggagcgtatccaggcctggatgcgggagaagcagggaggcagattgtcttag
DBGET
integrated database retrieval system
