Clupea harengus (Atlantic herring): 105899069
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Entry
105899069 CDS
T09045
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
char01009
]
105899069 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105899069 (hdac6)
04131 Membrane trafficking [BR:
char04131
]
105899069 (hdac6)
03036 Chromosome and associated proteins [BR:
char03036
]
105899069 (hdac6)
Enzymes [BR:
char01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
105899069 (hdac6)
Protein phosphatases and associated proteins [BR:
char01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
105899069 (hdac6)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
105899069 (hdac6)
Membrane trafficking [BR:
char04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
105899069 (hdac6)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
105899069 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
105899069
NCBI-ProteinID:
XP_031422041
Ensembl:
ENSCHAG00000016727
UniProt:
A0A6P8FEA6
LinkDB
All DBs
Position
4:10624624..10641518
Genome browser
AA seq
1114 aa
AA seq
DB search
MDSGLDPFGPMASKGSGRSPQPTDNTTKRESNKGKGKKSALQEARRKGRMDRSKGEEEIS
NQLKNLDLHSRTRAAGTGLVSSDIFTQYHCLWDTSHPECPERISAVMDMAEKQGLLARCV
SVEPRVATEEELLLVHTKEYIELMTRTATMAEEELKSLSDTYDSIFIHPNSFKCASLAVG
AVLQLVDKVMMSEIRNGFSIARPPGHHAQAGQMNGYCMFNNLAIAARYAQKQHGVKRVLI
VDWDVHHGQGIQYIFQEDPSVLYFSVHRYEDGAFWPHLKDSDSNVIGTGPGEGYNINLPW
NQTGMKDGDYLTAFQQLLLPVAYEFQPELVLVAAGFDAVVGDPKGEMSASPQCFAVLTHL
LKGLAQGRLVLALEGGYNLQSTAKGACACLKSLLGDSCPRLNAPVAPCESALTSISETIT
ALYPHWSCLQTFEGGPLPQQSDEPNEDQPGSQLTGLVYDQRMMEHHNMWDVHHPEQPMRI
ARIFSRHEDLGLVARCYSIPARLATEKELALCHSVGHIQKIKGTEAMKPRDLHRLGGEYN
SIFINNESYKCARLAAGACFNAAQAVLIGEVRNAVAIVRPPGHHAEVDKACGFCFFNTAA
LTARYAQSLSPSHKPLRVLILDWDVHHGNGTQHIFMEDDSVLYVSLHRYEDGTFFPNSED
ADYDKVGEEKGRGFNVNIPWSGGKMGDSEYLTAFHHIVMPIATEFSPDLVLVSAGFDAAR
GDPLGGYQVTPEGYALLTHQLMTLAAGRVIIILEGGYNLTSISESMAMCTSMLLGDSPPL
LPPQPPPHPNAAISINNVLRAHAPYWSSLRIQIPHSLRLSLPSPKTRGKRTPTGKGKKSP
RQSTPAQSPGQRDSPETASPVASSQGTANESGLEDLTKGLFSLDLNTTTSANNSPSSVAV
GGARRKVKPGPQEGSEMKKGASPGNVTSDNMEEEEENKDYPQENAQSTSEMQPVAETGSA
TIATVDQDSVELEGACGTSKSIFIICGGEEMDSGAVQPLAWCPHLEALKPVPPTGIGFQQ
PCEECGSEEENWVCLCCYKVLCGRFVNEHMVMHGVASSHPLVMSFSDISVWCYPCESYID
NKALYDAKNTAHAAKFGQDMPALTVEKPVEGSWP
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atggattctggcctcgatcctttcggacccatggcgtcgaagggttctggcagatctcca
cagcctacagacaacacaactaaaagggaaagcaataagggtaaaggtaaaaagtccgcc
cttcaagaagctagaagaaaaggaagaatggacagaagcaagggagaagaagagataagc
aatcagctgaaaaacctggatttgcacagccggaccagagctgctggcacaggccttgtc
tcctcagatattttcactcaataccactgcctttgggatacaagccatccagaatgccca
gagcgaatcagtgctgtgatggacatggctgaaaagcagggtctgcttgcccgctgtgtg
agtgtggagcccagagttgccacagaggaggagctgttgcttgttcacacgaaagaatac
atcgagctcatgactcggacagcgacgatggcggaagaggagctgaagtctctgtctgac
acttatgactccatcttcatccatccaaattcctttaaatgtgcctccttagctgtgggt
gctgtcctgcagctagtcgataaggtgatgatgtcagagatccgaaatggcttctctatt
gccaggccaccaggccatcatgctcaggctggccaaatgaatggctactgcatgtttaat
aacctggcaatagcagcacgctatgctcagaagcaacacggggtaaaacgagtcttaatt
gtggactgggatgtgcatcatgggcaaggaatccaatacatttttcaagaggatccaagc
gtgctgtacttctcagtgcaccggtatgaggatggagcgttctggcctcacctgaaggac
tctgacagcaatgtgattggcactggtccaggagagggctacaatatcaacctgccctgg
aatcagacgggaatgaaagatggagactacctgacggcctttcagcagcttctcctgcct
gtggcttatgagttccagccagagctagtgttggtggccgcaggctttgatgctgtggtt
ggggaccccaagggagagatgtctgccagtccccagtgttttgctgtcctaactcacctg
ctgaaaggtcttgctcagggtagactagtacttgccctggagggtggatataacttgcag
tccacagcgaagggtgcctgtgcctgcctgaagtcattactgggcgattcctgtccccgc
cttaatgcgcctgtggctccgtgtgaaagtgcccttacgtccatctcagagaccatcact
gccctttacccgcactggtcctgtcttcagacatttgagggaggtcccctaccacagcag
tcagatgaaccaaacgaggaccaaccaggcagccagcttactggcctagtatatgaccaa
aggatgatggagcaccacaacatgtgggatgttcatcacccagaacagccaatgaggatt
gctcgcattttctcgcggcatgaggacctgggactggttgcccgatgctacagcatacct
gctcgtctggccacagagaaagagctggctctgtgtcacagcgtcgggcacatccagaaa
atcaagggcaccgaggctatgaagccccgagacctgcacaggctggggggagagtacaac
tccatcttcatcaacaatgaaagctacaagtgcgcccgtctggcagcgggggcctgcttc
aacgctgcacaggctgttctgattggagaggtgagaaacgctgtggccattgtccggcct
ccaggtcaccacgctgaggtagacaaggcatgtggcttctgcttcttcaacacggcggcg
ctgacggcgcgctatgctcagagcctctcgcccagccataagccgctgcgggttctcatc
ttggactgggacgttcaccacggcaacggcacccagcatatcttcatggaggatgacagt
gtgctgtacgtctcactacatcgatatgaggatggtacattcttccctaactctgaggat
gccgactatgacaaagtcggggaggaaaaaggtcgtggcttcaacgtcaacattccctgg
agtggagggaagatgggagactcagagtacctgacagccttccaccacattgtcatgccc
atcgccacggaatttagcccagacctggtgctggtgtctgctggtttcgacgctgcccgg
ggagaccctctgggaggctaccaggtgacccctgagggctatgccctcctcacccatcag
ctcatgaccctggcagccggaagagtgatcatcattctggagggtggctataacctgacc
tccatctctgagtcgatggccatgtgcaccagcatgctactgggagactccccaccactg
ctgcccccccagccccctccacatccaaatgccgccatcagcatcaacaatgtcctgcgg
gctcacgccccctactggagctctttgagaatacaaattccccattccctgcggttgtct
ttgccttcccccaaaacgagaggcaagaggacacctactggaaaaggcaaaaaatctccg
cggcagtcgactcctgcccaaagtcccgggcagagggattcaccagaaacagcctcccct
gtggcctcatcgcagggcactgccaatgagtcaggcctggaggacctcaccaagggcctg
ttctcactagacctgaacacaactacctcagccaataacagcccatcgtcagttgctgtg
ggaggggccagacggaaagtcaagcccggccctcaggaaggatccgaaatgaagaaggga
gcatcacctgggaacgtgacctcagacaacatggaggaggaggaggagaacaaagactac
ccacaggaaaatgcacaatctacatctgagatgcagccggttgctgaaactggctcagcg
accatagcaacagttgaccaagacagtgtggaacttgagggggcttgtggcacatcaaag
agcatctttatcatctgtggaggcgaagagatggattcaggtgcggtgcagcctctggcc
tggtgcccccatttggaggcgctgaagcctgttccccctacaggcataggcttccagcaa
ccgtgtgaggaatgtggatcagaggaagagaactgggtctgtctctgctgttacaaggtg
ctttgtggtcgctttgttaatgagcacatggtgatgcatggcgtggcgtctagtcatccc
ctggtgatgagtttctctgatatctctgtgtggtgctacccatgcgagtcctacatcgac
aacaaggccctttatgatgccaagaacacagcccacgcggcgaagtttgggcaggacatg
cccgcccttacagtggagaagccggtcgaaggatcctggccgtga
DBGET
integrated database retrieval system
