Clupea harengus (Atlantic herring): 105899127
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Entry
105899127 CDS
T09045
Symbol
puf60a
Name
(RefSeq) poly(U)-binding-splicing factor PUF60a isoform X1
KO
K12838
poly(U)-binding-splicing factor PUF60
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105899127 (puf60a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
char03041
]
105899127 (puf60a)
Spliceosome [BR:
char03041
]
Complex A
U2 snRNP components
U2 related factors
105899127 (puf60a)
Complex B
105899127 (puf60a)
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GFIT
Motif
Pfam:
RRM_1
RRM_7
Motif
Other DBs
NCBI-GeneID:
105899127
NCBI-ProteinID:
XP_031419121
Ensembl:
ENSCHAG00000018860
UniProt:
A0A6P8F7J7
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All DBs
Position
25:complement(12654614..12664510)
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AA seq
547 aa
AA seq
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MENGQSTGSKLGLPPLTPEQQEALQKVRNGTEAALFWFSLAKKYAMEQSIKSVLVKQTLA
QQQQQINNIQMASLSMGFGDPLSPLQSVAAQRQRALAIMCRVYVGSIYYELGEDTVRQAF
AAFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVLLGGRNIKCGRPSNIG
QAQPIIDQLAEEARAFNRIYVASVHPDLSDDDIKSVFEAFGRILSCLLARDPTTGKHKGY
GFIEYDKPQSSLDAVSSMNLFDLGGQYLRVGKAVTPPMPLMTHTNPGGLPPAAAVAAAAA
TAKITAQMAWNLSQPENRTEDFLHCLEAVAGAQILGAMTGCQTGLALPQAVMAAQAPGVI
TGVTPARPTMPVLPQVGLVNPVLSSPPSMASAVAAAQALVQEARKEEEEAREALEGTGQE
MLSEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVGPEDIDDELEGEVTEECGKFGA
VNRVIIYQEKQGEEEGAEVIVKIFVEFSLAAEMNKGIQALNNRWFGGRKVIAEVYDQERF
DNSDLSA
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atggagaatggacagagcactggctcaaaactcggcctgccacctctcacgcccgagcag
caggaggcgctacagaaggtgaggaacgggacggaggcagcattattttggttcagctta
gcaaagaagtatgcgatggagcagagcatcaagagtgtcctggtcaaacaaacccttgcc
caacaacaacaacagataaacaacatacagatggcatcattgtcaatgggctttggagat
cccctctcaccattacaatcggtggcagcacagcggcaacgagccttggccatcatgtgc
cgcgtgtacgtgggctccatctactacgagctgggcgaggacaccgtccgccaggccttt
gcagccttcggccccattaagagcattgacatgtcctgggactctgttacaatgaaacat
aagggttttgcatttgtggagtatgaggtaccagaggctgctcagttagccctggagcaa
atgaactcagtcttgcttggtgggaggaacattaaatgtggaagacctagcaacatcggt
caagctcaaccaatcattgaccagttagcagaagaagcgcgagccttcaacagaatttat
gtggcctctgtccacccagacttgtcagacgatgacattaagagtgtctttgaggccttt
ggaagaatcctatcctgtttattagcacgggaccccactacaggaaaacataaaggttat
ggattcatagagtacgacaagccgcagtcgtcgctggacgcagtgtcctctatgaacctc
tttgacctgggcgggcagtacctgcgcgtgggcaaggccgtgacgccgcccatgcccctt
atgacccacaccaatcccggcggcctccctccagcggccgctgtggcagccgccgctgcc
accgccaaaattaccgcacagatggcatggaatctgtcccagccggagaatcgaacagaa
gacttcctacactgtctggaagcggtggcgggcgctcagatcctgggggcgatgactggt
tgccagacaggcctggccctgcctcaagcagttatggctgcgcaagctccgggagtcatc
acaggggtgactccagccaggccgacaatgcccgtgctcccccaggtgggactggtgaac
ccggtgctgtcctcgccgccgtcgatggcctcggctgtagcggccgcacaagccttagtc
caagaggccaggaaggaagaggaggaggcacgggaggccctggaaggcacggggcaggag
atgttgagcgagcaggagcacatgagcatctctggcagcagcgcccggcacatggtcatg
cagaagctgctccgaaaacaagagtccacagtcatggtgcttaggaacatggtgggcccg
gaagacatcgatgatgagcttgagggcgaagtaacggaggaatgcggcaagttcggcgct
gtgaaccgagtcatcatctaccaggagaagcagggtgaggaggagggcgctgaggtcata
gtaaagattttcgtggagttctctcttgcagcagagatgaacaagggcatccaggcactc
aacaaccgctggtttggagggcgcaaggtcattgcggaagtctatgaccaggaacgattt
gacaacagcgatctctcagcatag
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