Clupea harengus (Atlantic herring): 105899199
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Entry
105899199 CDS
T09045
Name
(RefSeq) deoxyribodipyrimidine photo-lyase-like
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
char03400
]
105899199
Enzymes [BR:
char01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
105899199
DNA repair and recombination proteins [BR:
char03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
105899199
Prokaryotic type
105899199
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_photolyase
Motif
Other DBs
NCBI-GeneID:
105899199
NCBI-ProteinID:
XP_031416103
UniProt:
A0A6P8EJ93
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Position
22:22293318..22297862
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AA seq
502 aa
AA seq
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MAPKKADLKRKAKSVKISNAKQLKVDRVEGWLEGEVAEVRRGAQDVKFNEKRLRFLSDTK
TVIRGTEGVVYWMGRDQRVQDNWALIYAQQLAIAEELPLHICFCLMPNFLEATFRHYSFM
LQGLQEVAKESSVLDIQFHLLSGFPGDTLPGFIKEWNMGAVVTDFWPLRDPTRWVDDVKK
AISPDIPFIQVDAHNVVPCWEASGKLEYAARTIRGKITKLLPTFLTEFPAVDKHPHSSPK
TAQAVNWNEILSSLGVDRCVGEVDWAKPGTSGGMAMLESFIDERLHCFATLRNNPNVAAA
SQLSPWIHFGQLSAQRVVRQVQKNGKKFSESVASFTEEMVVRRELADNFCFYNENYDKIE
GAYEWARKTLKDHAKDKRSHIYTREQLEQAKTHDKLWNAAQTQLLIEGKIHGFMRMYWAK
KILEWTSSPEEALSIAIFLNDRYSLDGCDPNGYVGCMWSICGIHDMGWAERPVFGKIRYM
NYDGCKRKFDVAQFERLYSKMG
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccaaaaaagcagaccttaagcgcaaggcaaagtcagtgaaaataagcaacgca
aaacaactgaaagtagacagagtggaaggatggctggaaggtgaggtggctgaggtacga
agaggagctcaggatgtgaaattcaacgagaagcgtctcagattcttgtctgacaccaaa
acagtaattcgagggactgaaggggtggtgtactggatgggaagggatcagcgagttcaa
gataattgggcactgatctatgcccaacagttggccatcgcagaggaactacccctgcat
atttgcttctgcctcatgccgaactttttagaggcaacatttcgacactattccttcatg
ttacaaggactgcaggaggtggccaaggaaagcagtgttctggatattcagttccatctt
ctcagtggcttccctggagataccctccctggttttataaaggagtggaacatgggggca
gtagtaactgatttctggccactcagggatcccacacggtgggtggacgatgtcaaaaaa
gcaatcagtccagatatccctttcattcaggtagatgctcacaatgtggtgccttgctgg
gaagcatctggaaaactggagtatgctgctagaaccatccgtgggaagattactaaactg
ctgcccacatttctcaccgagttccctgctgttgacaaacatccacactcatccccaaaa
actgcccaggcagtgaactggaatgagattctgtcatctctgggagtggatcggtgtgtt
ggtgaggtagactgggcaaaacctggaacttcagggggtatggctatgctggagtctttc
atcgacgagcgcctgcattgctttgccactctccggaacaaccccaacgtggctgccgct
agccagctctcaccatggatccactttggtcagctttcagcccagcgtgtggtccggcag
gtccaaaagaatggcaagaaattcagtgagtccgtggcctcctttactgaggaaatggtg
gtgcgcagggaacttgcagacaacttctgcttttacaatgagaactacgacaagattgag
ggtgcttatgagtgggcccggaagaccctgaaggatcatgcaaaagacaaaagatctcac
atctacactcgcgagcagctggagcaggccaagactcatgacaagctgtggaatgcagcc
cagactcagttattgattgagggaaagatccatggattcatgagaatgtactgggccaaa
aagatcctggaatggacttcctctccagaggaggcactctctattgcaattttcctcaat
gaccgttattctttagatggatgtgaccctaacggatatgttggttgcatgtggtccatt
tgtggaatacatgatatgggttgggccgagaggcctgtctttgggaaaatccgctacatg
aactatgatggatgcaaacgcaagtttgacgttgcacaatttgaaaggctgtacagcaag
atggggtga
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