Clupea harengus (Atlantic herring): 105899263 Help Entry 105899263         CDS       T09045                                  Symbol cop1 Name (RefSeq) E3 ubiquitin-protein ligase COP1   KO K10143   E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27] Organism char  Clupea harengus (Atlantic herring) Pathway char04115   p53 signaling pathway char04120   Ubiquitin mediated proteolysis Brite KEGG Orthology (KO) [BR:char00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     105899263 (cop1)  09140 Cellular Processes   09143 Cell growth and death    04115 p53 signaling pathway     105899263 (cop1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04121 Ubiquitin system [BR:char04121]     105899263 (cop1) Enzymes [BR:char01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      105899263 (cop1) Ubiquitin system [BR:char04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    Other single Ring-finger type E3     105899263 (cop1)   Multi subunit type E3    Cul4 complex     Target recognizing subunit (DCAF)      105899263 (cop1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_EIPR1 Beta-prop_RIG_2nd zf-C3HC4_2 EIF3I Beta-prop_TEP1_C Beta-prop_WDR19_1st zf-C3HC4 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 zf-RING_2 Beta-prop_EML zf-RING_UBOX Beta-prop_DCAF4 zf-C3HC4_3 zf-RING_5 Beta-prop_WDR90_POC16_2nd zf-C3HC4_4 RING_XB3-XBAT31 WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_Vps41 WD40_like Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_IFT122_1st Beta-prop_NUP159_NUP214 zf-RING_10 UvrD-helicase zf-rbx1 WDR90_beta-prop_4th zf_C2H2_10 Sina_RING Tma16 Motif Other DBs NCBI-GeneID:  105899263 NCBI-ProteinID:  XP_012681882 Ensembl:  ENSCHAG00000025144 UniProt:  A0A6P3VV50 LinkDB All DBs Position 25:complement(13595447..13606507) Genome browser AA seq 715 aa AA seqDB search MSSSRQPQTGGGSGSGPGPGTSSSISTASTTNAGSGMSNATNGNNSGNGVSSRTMGTGGE GLPVPSLVVHSQRGNSLTPLSGRPASSSGGSSSKKRHLQTPLYNGLINSYEDKSNDFVCP ICFEMIEEAHMTKCGHSFCYKCIRQSLEDSNRCPKCNYIIDNVDQLYPNFLVNELILKQK QRFEEKRLKRDHPNGHRWPFSQDVLGTDQESLDLANVNYMLELFLQKKKQLEAESQAAQR QILMEFLQEARKNKREQLDQLQKEVNFLEEDIKRVEEMSGLHSPASDMDPNLDSTVPQIE AHSPAPSSIIEPTEYSQPPGFGGSSQGKRQTWYNSTLASRRKRLTAHFEDLEQCYFSNRM SRITDDSRNVNQLDDFMECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYF AIAGVTKKIKVYEYGTVIQDAVDIHYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVI LWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKA NVCCVKFSPTSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSA STDSQLKLWNVNKPYCLRSFKGHINEKNFVGLASNGDYVACGSENNSLYLYYKGLSKTLL TFKFDTVKSVLDKDKKEDDTNEFVSAVCWRALPDGESNVLIAANSQGTIKVLELV NT seq 2148 nt NT seq  +upstreamnt  +downstreamnt atgtcaagtagccgacagccacagactggtggagggtcaggctcagggccagggcctggg acaagtagcagtatcagcactgccagtaccaccaatgcaggcagtggtatgagtaatgct acaaatgggaataattctggaaatggagtgtcctcaagaactatgggaacaggaggcgaa ggattgcccgtaccttcacttgttgtccattctcaaaggggcaacagtttaacaccgctt agtggcagacctgcctcttcttctggaggaagcagcagtaaaaaacgacatttacaaact cccctttataatggccttattaattcttatgaagataagagcaatgactttgtgtgtccc atctgttttgagatgatcgaggaagcacatatgacaaagtgtggtcacagtttctgttac aagtgtatccgtcagagcttggaagacagcaacaggtgcccaaaatgcaactacataatc gataatgtggatcaactctatccaaactttcttgttaatgagctcatcctgaagcagaag caacgatttgaggagaagcgacttaagagagaccatcctaatggtcataggtggccattt tcccaagatgttctgggcaccgatcaagagagtctggatttggcgaatgtcaactacatg ctggagttgtttctgcagaagaagaagcagctggaggcggagtcccaagcagctcaacgc cagatcctgatggaatttcttcaggaggcaagaaagaacaagagagagcaattagaccag ttacagaaggaggtcaactttttggaggaagacatcaaacgggttgaggaaatgagtgga ctacattcaccagcaagtgacatggaccccaatttggacagcacagtccctcagattgaa gcccattctccagcacccagtagtattattgagcccacagagtatagccaacctccagga tttggtggaagctctcaggggaaacgacaaacctggtataatagtacgctggcgtcacga cgaaagagactcacggctcatttcgaagacctggagcaatgttacttctccaataggatg tctcgtataacagatgacagtaggaatgtcaatcagctggatgatttcatggagtgtctc tccaaattcacacggtacaactctgtccggcctctggccaccctctcctatgcaagcgac ctctacaacggctccagtattgtctccagcattgaatttgaccgtgactgtgattacttc gccatcgccggcgtcaccaagaaaattaaggtgtacgagtacggcactgtgatccaggat gccgtggacatccattaccctgtcaacgagatgacatgcaactccaaaataagctgtatc agctggagcagttaccacaagaatctgttggcaagcagtgactacgaggggacggtcatc ctctgggatggcttcacgggccaaaggtcaaaggtctaccaggagcatgagaagaggtgt tggagtgtggatttcaatcttatggaccctaaactcctggcttctggctcagatgatgcg aaagtgaagttatggtcaaccaaccttgacaactctgtggcaagcatcgaggccaaggca aacgtatgctgtgttaagttcagtcccacgtcgaggtatcatcttgccttcggctgcgca gaccattgcgtccactactatgatctccggaacactaagcagccgatcatggtcttcaag ggacacaggaaagctgtttcctatgcgaaatttgtcaacggggaggaaatcgtatctgcc tccacggacagccagctaaagttgtggaacgtcaacaagccctactgcctgcgctctttc aagggccacatcaatgagaagaactttgtgggcctggcctccaacggagactatgtagcg tgcggaagtgagaacaactcactttatctctactacaaagggctgtccaaaacgctgctg actttcaagttcgacacggtgaagagcgtgctggacaaagacaagaaggaggacgacacc aacgagtttgtcagtgcagtgtgctggagagcgctgccagatggggagtctaatgtgctg atagccgccaacagtcaaggaacaataaaggtacttgagcttgtttga

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