Clupea harengus (Atlantic herring): 105899289
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Entry
105899289 CDS
T09045
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04510
Focal adhesion
char04512
ECM-receptor interaction
char04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105899289
04518 Integrin signaling
105899289
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
105899289
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
char00536
]
105899289
Glycosaminoglycan binding proteins [BR:
char00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105899289
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
TelK_muzzle
Motif
Other DBs
NCBI-GeneID:
105899289
NCBI-ProteinID:
XP_012681901
UniProt:
A0A6P3VUU5
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All DBs
Position
1:complement(26893157..26919326)
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AA seq
1488 aa
AA seq
DB search
MFSFVDSRTVLLLVATQVVLLSLVRCQQEDDQDELGGCIQDGRHYSDKDVWKPEPCRICV
CDTGAVLCDEIICDELRDCANPVIPVGECCPVCPAEHSTPIEAVGARGQKGEPGDITDVV
GPRGPSGPMGPPGEQGTRGQRGLKGDTGNHGPRGRDGEPGTPGNPGPAGPPGPPGLGGNF
AAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGGPGEAGEPGPAGAL
GPRGPSGPSGKPGSDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGLKGHRGHPGVDGLK
GETGTAGAKGEGGAPGENGAPGPMGPRGLPGERGRPGAAGSAGARGNDGLPGPAGPPGPL
GPAGAPGFPGSPGSKGEAGPTGTRGAEGAQGPRGEGGTPGSPGPAGAGGNPGTDGIPGSK
GSAGGAGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGERGVAGPL
GAPGPSGEEGKRGARGEPGTAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPGLG
GPKGGTGDPGRTGEPGLPGARGLTGRPGDAGPQGKVGPGGAPGEDGRPGPPGPLGARGQP
GVMGFPGPKGANGEPGKTGEKGLLGNPGLRGLSGKDGETGSSGPPGPNGPAGERGEQGQA
GPSGFQGLPGPSGAPGEAGKPGDMGVPGEGGAAGPSGPRGERGFPGERGGAGAGGLQGPR
GLPGTPGTDGPKGAIGPSGGSGAQGPPGLQGMPGERGASGISGAKGDRGDNGEKGPEGAP
GKDGGRGLTGPIGPPGPSGPNGAKGENGPLGPNGAAGARGAPGDRGEGGPPGPAGFAGPP
GSDGQPGAKGELGEGGQKGDAGANGPQGPSGAPGPSGPTGVFGPKGARGAQGAAGATGFP
GAAGRVGSPGPNGNPGPSGPPGGAGKDGPKGVRGDAGPPGRPGDAGLRGAAGTPGEKGEA
GEDGPPGPDGIHGPSGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGSPGAGGDRGPP
GPVGPPGLSGPGGEPGREGNAGADGPPGRDGAGGVKGERGNTGPVGAPGAPGATGSPGPV
GPLGKQGDRGESGAQGPAGPVGPSGARGMAGPQGPRGDKGESGEAGERGQKGHRGFTGLQ
GLPGSAGPAGDAGSAGPSGPAGAKGVPGAVGLSGKDGANGLSGPVGPPGPRGRSGEAGPA
GPPGNAGPPGPPGPPGPGIDMSAFAGLSQHEKGPDPMRYMRADDPSSSIRQHDMEVDSTL
KSITSQLEDMRNPDGTRKNPARTCRDLQLCHPEWKSGDYYVDPNLGSTADAIKVFCNMES
GQTCVYPNTPSVPRKNWWSSKSKTHKHVWFGETMNGGFHFSYADDNQPGNSANIQLTFLR
LLSTDASQNITYHCKNSIAYMDQASGNLKKAVLLQGSNDIEIRAEGNSRFTYSVLEDGCK
KHTGQWGKTVIEYKTQKTSRLPIVDIAPMDVGGADQEFGVDIGAVCFL
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcacggactgttttgctacttgtagcaacccaagttgtatta
ctatcgcttgtaagatgccaacaggaggatgaccaggatgagctgggtggctgcatccaa
gatggccgccactacagtgataaggacgtgtggaagccggagccgtgtcgcatctgcgtg
tgtgacacgggtgccgtgctgtgcgatgagatcatctgcgacgagctgcgcgactgtgcc
aaccccgtcattcccgttggagagtgctgccctgtgtgcccagctgagcacagcaccccc
attgaggcagttggtgcaaggggacagaagggtgagccaggagacattactgatgtcgta
ggaccaagaggaccatcaggccccatgggccccccgggagagcaaggaacccgtggtcag
agaggccttaagggagatacgggaaatcacggacctcgaggcagagacggtgagcccggc
acccctggaaacccaggacctgctggccccccaggccctcctggacttggtggaaacttt
gctgctcagatggctggaggctttgatgagaaggctggaggtgctcagatgggtgtgatg
cagggacccatgggccccatgggacctcgtggaccccctggaccatctggatctcctggc
ccacagggtttccaaggcggccctggtgaggctggagaacctggacctgctggagctctg
ggaccccgtggcccctctggaccctcaggaaaaccaggaagtgatggagaagctggtaag
cctggcaaagctggtgagcgtggacctcccggccctcagggagctcgtggattcccagga
acacctggacttccaggactcaaaggacacagaggacacccaggtgtggatggacttaag
ggagagactggtactgctggagctaagggtgagggtggtgctcctggtgagaatggcgct
cctggacccatgggacctcgtggtctgcctggcgagagaggacgtcctggggctgctgga
tctgctggtgctcgtggtaacgatggtctgcctggtcctgctggtccccctggtcccctt
ggccccgctggtgccccaggtttccctggatctccaggttccaagggtgaagctggtcca
actggtactcgcggagctgagggagctcagggaccccgtggagagggtggtacgcccgga
tctcctggacctgctggtgcaggcggtaaccctggaactgatggtatccctggctctaaa
ggatctgctggaggtgctggtattgctggtgcacctggtttccctggcccacgtggtcct
cccggaccccagggagctactggacctcttggacccaagggacagtctggtgatcctggt
atcccaggattcaagggtgaggctggacccaaaggagagcgcggtgttgctggacctcta
ggagcacctggaccttctggagaggagggtaagagaggagcaagaggagagcccggaact
gctggaccacttggacctcctggggagagaggcgcccctggtaaccgtggattccctggt
caagatggtcttgctggagctaagggagcccctggagaccgtggtgttcctggtctgggt
ggtcctaagggaggcactggagaccccggtcgcactggagagcctggccttcctggtgcc
agaggtcttactggtcgtcctggagatgctggtcctcaagggaaagttggtcccggtgga
gcccctggagaggatggacgtcccggaccccctgggcctctgggagctcgtggtcaacct
ggagtgatgggattccctggacctaagggtgccaatggagagcccggaaagactggagag
aaaggacttcttggtaaccctggtcttaggggtctgtctggaaaggatggtgagactgga
tcttctggtccccctggccctaatggccctgctggagagagaggagaacagggtcaggct
ggaccttctggcttccagggtctgcctgggccttctggcgcacctggagaggctggcaag
cctggtgatatgggtgttcctggagagggtggagctgctggcccctctggaccaagagga
gagcgtggtttccctggtgagagaggaggtgctggtgctgggggactgcagggacctcgt
ggtcttcctggaactcctggaactgatggacccaagggcgcgatcggaccttcaggaggt
tccggtgcccagggaccccctggtcttcagggaatgcctggtgagagaggagctagcggt
atctctggtgccaagggtgacagaggtgacaatggagagaagggacctgagggtgctcca
ggaaaagatggcggaagaggtttgactggccccattggtcctcctggtccttccggtcct
aatggagccaagggtgaaaatggtcctcttggacccaatggagctgctggtgcccgtgga
gcccctggtgatcgtggagagggtggtcctccaggccctgctggtttcgctggacctccc
ggttctgatggtcagcctggtgccaagggtgagctcggtgagggtggtcagaagggagat
gctggtgccaatggacctcagggaccttccggagcccccggaccttcaggtcccactggt
gtgtttgggcctaaaggagctcgtggtgcccagggagcagctggtgccactggtttccca
ggcgcagctggacgtgtcggatctccaggtcctaatggaaaccctggtccttctggccca
cctggtggcgctggaaaagacggtcctaagggagtgcgcggtgatgctggtcccccaggt
agaccaggagatgctggtctgcgtggagctgctggcacccctggagagaaaggagaagcg
ggagaggatggtccccctggtcctgatggtattcatggcccatctggtcttgctggtcag
cgtggtattgttggtttgcctggacagcgcggtgagagaggcttccctggtctcccagga
ccttctggggagccaggtaaacagggatctcccggtgctggtggtgaccgtggaccccct
ggcccagtcgggcctcctggactgagtggacctggtggagaacctggaagagagggtaac
gctggtgctgatggacctcctggtagagatggagctggaggagtcaagggagagcgtggt
aacactggacccgttggtgcccctggtgctcctggagccaccggttcccctggccccgtc
ggacctctgggcaaacagggagacagaggagagtctggtgcccaaggacctgctggcccc
gttggaccttctggagctagaggcatggctggaccccaaggcccacgtggagacaaggga
gagagcggcgaggctggagagagaggacagaagggacacagaggattcactggtctgcag
ggtctgcctggatctgctggtcctgctggagatgctggttctgctggaccttctggacct
gctggagctaagggagtccctggcgcagttggactttctggaaaggatggtgctaacggc
ctgtctggacccgtcggaccccccggaccccgtggacgctctggagaggctggccctgct
ggtcctcccggtaacgctggaccccctggtcctcctggtcccccaggccctggcatcgac
atgtctgccttcgctggactgtcccagcatgagaagggcccagaccccatgagatacatg
cgggctgatgacccatccagctccatcaggcaacacgacatggaggtggattccacactc
aagtccatcaccagccagctggaggacatgcgcaaccctgatggaacccgcaagaaccca
gcacgcacatgcagggatctccaactctgccacccagaatggaagagcggcgattactat
gtggatcccaacttgggcagcactgcagatgccatcaaggtcttctgcaacatggaaagt
ggtcagacctgtgtctaccccaacactcccagcgtcccacgcaagaactggtggagcagc
aagagcaagacgcacaaacatgtctggttcggcgagaccatgaatggtggattccacttc
agctatgctgatgataaccagccaggcaacagcgccaacatccagttgactttcttgagg
ctgctgtccacagacgcttcccagaacatcacctaccactgcaagaacagcatcgcctac
atggaccaggcttctggcaacctgaagaaggctgtgctgctgcagggctccaacgacatt
gagatcagagctgaaggcaacagccgcttcacatacagcgtgctggaagatggctgcaag
aaacacacaggccagtggggcaagacagtgattgagtacaaaacccagaagacgtccaga
ctgccgatcgtggacatcgctcccatggacgtaggaggcgctgaccaggagtttggagtg
gacatcggagccgtctgcttcttgtaa
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integrated database retrieval system
