Clupea harengus (Atlantic herring): 105899381
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Entry
105899381 CDS
T09045
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105899381 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
char03041
]
105899381 (sf3b1)
03036 Chromosome and associated proteins [BR:
char03036
]
105899381 (sf3b1)
Spliceosome [BR:
char03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
105899381 (sf3b1)
Complex B
105899381 (sf3b1)
Complex C
U2 SnRNP specific factors
105899381 (sf3b1)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
105899381 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
105899381
NCBI-ProteinID:
XP_012682006
Ensembl:
ENSCHAG00000019458
UniProt:
A0A6P3VVC3
LinkDB
All DBs
Position
2:complement(18632610..18646706)
Genome browser
AA seq
1310 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKAALVEKGEEGVGLDSTGYYDQEIYGGSDSRFAGYVTSI
AANEQEDDDEEDSSTSLLGQKKPGYHAPVAILNSIPQSDEQYDPFAEHRPQKIVDREDEY
KARRRQMIISPERLDPFADGGKTPDPKQQARTYMDVMREQHLSKEEKEIRLQMAEKAKSG
DLKVVNGSGKEAPAKRKRRWDQTAEPTTPSNGTPKKMSSWDQADAGGETPGHTPGHTPSN
SRWDETPGRPKGSETPGATPSSRMWEPTPSHTPAGAATPGRDATPGHGGTTPSARKNRWD
ETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPASQMGSSTPLLT
PGKTPIGTPAMHMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDDELDAMFPEGYKV
LPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQTEDRSMKQISDQPSGNLPFLKPDDIQY
FDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQ
ILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGR
EIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKS
KKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAE
AATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILI
REFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLV
DTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLID
GILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADL
ISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIK
DLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIR
RATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMN
EYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQH
MSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGL
FHPARKVRDVYWKIYNSIYIGSQDALIAHYPLVYNDEKNPFVRFELEYFM
NT seq
3933 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacacacgaagacatagaggcgcagatcctggaaatccagggg
atgaaagccgccctggtggagaaaggagaagagggtgtggggcttgattccactggatac
tacgaccaggagatctacggaggtagtgacagccgctttgcaggatacgtcacctccatc
gctgccaatgaacaggaggatgacgatgaggaagactcttctaccagtttactgggtcaa
aagaaaccagggtaccatgctccggtggcgatactcaattcgataccacagtcagatgag
cagtatgatccatttgcggagcaccggccacagaagatcgtggaccgagaggacgagtat
aaagcccgcaggcgacagatgatcatctctccagagcgactcgacccatttgcagatggg
gggaaaacgccagacccaaagcagcaggctaggacctacatggacgtcatgagggagcag
cacctgagcaaggaagagaaagagatcaggctgcagatggcagagaaggccaagtccgga
gacctgaaagtagtgaacggctctggtaaagaagcccctgccaagcgcaagcgccgctgg
gatcagaccgctgaacccacaacacccagcaatggcacccccaagaaaatgtccagctgg
gaccaggccgatgccggcggcgagacaccgggacacacacctggacacactccttccaac
agccgctgggatgagaccccggggcgccccaagggcagcgagacgcccggcgccaccccc
agtagccgcatgtgggagcccacacccagtcacacacctgccggcgctgccacgcccgga
agagatgccaccccaggccacgggggcaccacaccaagcgctcgcaaaaaccgctgggac
gaaacgccaaagacagagagagagaccccaggccacggcagtggctgggccgagacgcct
cgcacagacaggggcgacgagtctgtgggggagacgcccacccccggcgccagcaagagg
aagtcccgctgggacgaaacccctgccagccagatgggctcctccacccctctgctcacg
cctggaaaaacacccatcggcacgccagccatgcacatggccacccccaccccaggtcac
ctgatgagcatgaccccagagcagctgcaggcctggcgctgggagagggagatagatgag
aggaaccgccctctgactgacgatgagctggacgccatgttcccagagggatacaaggtc
ctgccaccacccgcgggctacgttcccatccgcaccccagcccgcaagctctcagccacc
cccactcccatcgggggcatgactggcttccacatgcagacggaggaccgctccatgaag
cagatcagcgaccagccctccggcaacctgcccttcctcaagccagatgacatccagtac
tttgacaaactcttggtggaggtggatgagtccactctgagcccagaggaacagaaggag
cgcaagatcatgaagctgctgctgaagatcaaaaacggaacaccacccatgagaaaggct
gctctgaggcagatcacagataaagctcgcgagtttggcgcggggcctctcttcaaccag
atcctgcccttgctcatgtctcccacactggaggaccaagagcgccatctgctggtcaaa
gtcattgatcgcatcctgtacaaactggacgacctggtccgaccatatgtacacaagatc
cttgtggtgattgagcccctgttgattgatgaagattactacgccagagtggaaggcaga
gagatcatctccaacttggccaaggctgctggtttggccaccatgatctccaccatgagg
ccagacattgacaacatggacgagtatgtgagaaacaccacagctcgtgcctttgccgtg
gtggcgtcggctctgggcatcccctccctgctccccttcctcaaggccgtgtgcaagagc
aagaagtcctggcaggctcgccacactggcatcaagattgtccagcagatcgccatcctc
atgggctgtgccatcctgccccatctccgcagcttggtggagatcatagagcacggtctg
gttgacgagcagcagaaggtgcgcaccatcagtgccctggctatcgctgctctggctgaa
gctgcaaccccgtacggtatcgagtccttcgactcagtgctgaaacccctctggaagggt
atcaggcaacacagaggaaagggtctggctgctttcttgaaggccattggctatctgatc
ccccttatggacgctgagtacgccaactactacaccagggaagtgatgcttatcctcatc
cgagagttccagtctcctgacgaggagatgaagaagattgtgctcaaggtggtgaagcag
tgctgtggcacagatggtgtggaggccaactacatcaagacggagatcctgccacccttc
ttcaagcacttctggcagcacagaatggccctggacaggcgcaactatagacagctggta
gacaccacagtggagctggctaataaggtgggagcagcggagatcatctcgcgtatcgtg
gacgacctgaaggacgaggctgaacagtacaggaagatggtgatggagaccatcgagaag
atcatgggcaacctgggcgcggccgacatcgaccacaagctggaggagcagctgatcgac
ggcatcctgtacgccttccaggagcagaccactgaggactctgtgatgttgaatgggttt
ggtacagtggtcaatgctctgggcaagcgggtgaaaccctacctgcctcagatctgcggt
accgtcctctggcgtctcaacaacaagtctgccaaagtccgtcagcaggccgctgacctc
atctcacgtaccgctgtggtgatgaagacctgtcaggaggagaagctgatgggtcatttg
ggtgtggtcctgtatgagtacttgggagaggagtacccagaggtacttggtagcatcctc
ggagccctgaaggccattgtcaatgtaatcggtatgcataagatgaccccgcctatcaaa
gatttgctccctcgtctgactcccattctgaagaacagacacgagaaggtgcaggagaac
tgtatcgatctggtgggcagaatcgctgacaggggtgctgagtatgtgtctgcccgtgag
tggatgcgcatctgctttgagctgctggagctgctgaaggcccacaagaaggccattcgc
agagccactgtcaacaccttcggctacattgccaaagccattggtcctcacgatgtgttg
gccacgctgctcaacaacctgaaggtgcaggaacgtcagaaccgcgtgtgcacgacggta
gctatcgccatcgtcgccgagacgtgttcccccttcaccgtgctcccagctctgatgaac
gagtacagggttccggagctcaacgtgcagaacggcgtgctcaaatcgctctcctttctg
tttgagtacatcggcgagatgggcaaggactacatctacgccgtcacgcccctcctggag
gacgcgctcatggacagagacctggtgcacaggcagacggccagcgccgtggtgcagcac
atgtccctgggcgtgtacggcttcggctgcgaagactcgctcaaccacctgctcaactac
gtgtggcccaacgtgttcgagacgtcgcctcacgtcatccaggcagtgatgggcgccctg
gagggcctgcgtgtggccatcgggccgtgccgcatgcttcagtactgcctacagggcctg
ttccacccggcacgaaaggtgcgagatgtgtactggaagatctacaactccatctacatc
ggctcccaagacgccctcatagcccattacccattggtctacaatgacgagaagaaccct
ttcgttcgatttgagttggagtatttcatgtga
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integrated database retrieval system
