Clupea harengus (Atlantic herring): 105899480
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Entry
105899480 CDS
T09045
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 2-like
KO
K05045
solute carrier family 6 (neurotransmitter transporter, betaine/GABA) member 12
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
105899480
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
char02000
]
105899480
Transporters [BR:
char02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
105899480
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Gene cluster
GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
105899480
NCBI-ProteinID:
XP_012682129
Ensembl:
ENSCHAG00000003731
UniProt:
A0A6P3VV70
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Position
9:13150936..13156941
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AA seq
585 aa
AA seq
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MAQVKYGGKEGLEERGHWAGKAEYLLAVAGNVVGLGNVWRFPYLCYKNGGGAFLVPYLVF
VVTCGVPLFLLETIMGQYTQEGAITSWQKLCPLAEGIGYAGQLILLYSCMCYIVILAWAL
LYLCFSFSSKLPWANCDNVWNTENCVDISGNNKTYNWTEQSNSTSPAIEFWERRVLAISA
GIEEVGSVRWEILLCLVAVWVACYFCVWKGVKSTGKVVYFTATFPYVMLLVLLIRGLTLP
GALQGVTYYLYPEPSKLLEPQVWMEAVSQVFFSFSVGVGTLTVLGSYNPYNNNCYKDCLW
LCVLNSCTSMVAGFAVFSMLGFMAHEQNVPIEMVAESGPGLAFIAYPQAVAMMPFPQLWA
VCFFVMIILLGLDTQFVMMEVVMTSVTDLVPSVLRRSGGRRELCLLLYCLLCFSAGVLMV
TEGGMYVFQIFDYYACNGTCLMFLAVFLSLAMGWVFGTERLYDIVEDMTGVRASPLFRMC
WKYLTPIVSLVSFICSLVEYQPLTFNRWYVYPGWVYVLGWMMSFSSVLLIPGVALFRLMT
GKGTLRERWLHLCCPANDLPLTRKQKPELQSLTEGKNFVAMGNQA
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atggcccaggttaaatatggagggaaggaggggttggaggagcgaggacactgggctggt
aaagcagagtacctattggccgttgcagggaatgtggttgggctgggaaacgtgtggagg
ttcccttatctatgctacaagaatggaggaggggccttccttgtgccctacttggtgttt
gtggtcacctgtggggtaccactgtttctcctggagaccatcatgggccagtatacccag
gaaggggccatcacctcctggcaaaaactgtgcccgctggccgagggcattggctacgcc
ggtcagctgatcctgttgtacagctgcatgtgttacattgtcatcctggcatgggcgctg
ttgtacctgtgcttctccttcagttctaagttaccatgggctaactgtgacaacgtctgg
aacacagaaaactgtgtggacatctctggaaacaacaagacatacaactggactgagcaa
agtaactcaacatctcctgccatagaattctgggagcgtcgtgtgctggcgatctcagca
ggcatagaggaggtgggcagtgtgaggtgggagatcctcctgtgtctcgttgctgtgtgg
gtcgcctgctatttctgtgtctggaaaggtgtgaagtctactggaaaggtggtctacttc
acagccacgttcccctacgtgatgctgctggtgctgctcatcagagggctgactctacct
ggagctctgcagggggtcacctactacctgtacccagagccctcaaagctgttagagcct
caggtgtggatggaagctgtctctcaggtcttcttttcctttagtgtgggtgtcggcaca
ctgactgttctggggagttacaatccctacaacaacaactgttacaaggactgcctctgg
ttatgcgtgttgaacagctgcaccagtatggtggctggatttgctgtgttctctatgctt
ggcttcatggcccatgaacagaatgttcccattgagatggtggcagagtcaggtcctggt
ctggctttcattgcgtaccctcaggctgtggccatgatgccctttccacagctgtgggca
gtctgcttcttcgtcatgataatcttacttggccttgatacacagtttgtgatgatggag
gtggtgatgacgtcggtaacagatctggtgccctctgtgctgcgccggtctggggggcga
cgggagctctgcctgctgctctattgcctcctctgcttcagcgcaggcgttctcatggtg
acagagggtgggatgtatgtcttccagatatttgattactacgcttgcaatgggacctgt
ctgatgttccttgcagtcttcttgtccttggcaatgggctgggtgtttggtactgagcgt
ttgtatgacatcgttgaggacatgactggggtgagggccagccccctctttcggatgtgc
tggaagtatctgacgcctattgtgtccctggtttcctttatttgctctcttgtcgagtac
cagcccctgaccttcaatcgctggtatgtttacccaggctgggtgtacgtgcttggctgg
atgatgtccttctcctctgtcctcctcataccaggggtggctctcttccggctcatgact
ggcaaaggcactttaagagagcgctggcttcacctgtgttgtcctgctaatgaccttccc
ttgacccggaagcagaagccagagcttcagagtcttacagagggaaagaattttgttgcc
atgggaaaccaagcataa
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