KEGG   Clupea harengus (Atlantic herring): 105899508
Entry
105899508         CDS       T09045                                 
Symbol
polr2i
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB9
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char03020  RNA polymerase
char03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:char00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    105899508 (polr2i)
  09124 Replication and repair
   03420 Nucleotide excision repair
    105899508 (polr2i)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:char03021]
    105899508 (polr2i)
   03400 DNA repair and recombination proteins [BR:char03400]
    105899508 (polr2i)
Transcription machinery [BR:char03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     105899508 (polr2i)
DNA repair and recombination proteins [BR:char03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      105899508 (polr2i)
SSDB
Motif
Pfam: Zn_ribbon_RPB9 Zn_ribbon_TFIIS Ogr_Delta Zn_ribbon_recom HVO_0758 Zn_Ribbon_TF Zn_ribbon_GRF_2 Zn_ribbon_NrdR GpA_ATPase SR1P Lar_restr_allev Zn_ribbon_IS1595 DUF3716 DZR
Other DBs
NCBI-GeneID: 105899508
NCBI-ProteinID: XP_012682160
Ensembl: ENSCHAG00000004584
UniProt: A0A6P3VV85
LinkDB
Position
9:complement(13231625..13235209)
AA seq 126 aa
MDIEGGTYEPGFVGIRFCQECNNMLYPKEDKDNRVLLYACRNCDYQQEADNSCIYVNKIT
HEVDELTQIIADISQDPTLPRTEDHPCPKCGHKEAVFFQSHSMKAEDAMRLYYVCTAPHC
GHRWTE
NT seq 381 nt   +upstreamnt  +downstreamnt
atggatatagagggtggcacgtatgagccgggatttgttggtattcgattctgccaagaa
tgcaataacatgttgtacccaaaagaggacaaggataatcgtgtcctgttatatgcatgc
aggaattgtgattaccagcaggaggcagacaacagctgcatttatgtcaacaagatcacc
cacgaggttgatgagttgacacagatcattgcagatatatcccaggatccaaccctgccc
cggacagaggaccacccgtgtcctaagtgtggccacaaggaagcagtgtttttccagtcg
cacagcatgaaagccgaggatgccatgcgtctgtactacgtctgtaccgcccctcactgt
ggacaccgctggacagaatga

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