Clupea harengus (Atlantic herring): 105899731
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Entry
105899731 CDS
T09045
Symbol
chd9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
char03036
]
105899731 (chd9)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
105899731 (chd9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
Motif
Other DBs
NCBI-GeneID:
105899731
NCBI-ProteinID:
XP_031425044
Ensembl:
ENSCHAG00000014665
UniProt:
A0A6P8F949
LinkDB
All DBs
Position
6:complement(16046287..16135822)
Genome browser
AA seq
3133 aa
AA seq
DB search
MTDPIMDFFDDPNLFVGGLEVLSDDGFNAGPSLVDELNLVPDFEPLQVDPMGTAKHINMM
QTPAPTSSQQGLAYASQMGHFDTIKAQSNMGQPYSGAEGNSGFMAQQPQFQGTPMGQAPQ
ANGLFPNSSPMWGNHDQNRNAYHPLSQQQQQQQQQQQQHQQQHQRQQQHPCQQTQQQQPH
GHHQLLNQHQPPPPHQQVNPQAMHQRGKPFQEHHNFASYYQGNMAQNQQQQQSHHGSLNT
GGSPFHCGVVPNASPQSKPYRDPSNPISSAPQQQQGGYPVPQQVQSYPGLGTEEANMAYS
MQSSPMPHALSSCSVSTSAAAGYPPSQYSFPRQPVGMGVSQPLSSGVVSMTTTSSARGAS
AHPVPDLSSSSCPFSSAPGLSQPQPHPQQQQQQQQQQHHHQQQQQQQQQQQRLKVAANQS
GEQCPFRSMQRSKPAYSTSDMYPETATSFSATAESHFPPQQQRSCQVSMPLPPANTTSTS
STNGGYQAMEKHLLHETQGGGFEGLEAPDLLDEDFLPQLEAALSQHEGSNCSWTNGSQGE
GDKEDQEDQEEEALSIHYEIQPPKNTNGSSSQVRVLSPQMKSGSSSSSSSSSSYSSASER
RAQKRQQQLQLQQQQQQQQAQAQAQAQAQAQQAMDSDDKQEKANRIISEAIAKARERGEK
NIPRVMSPDSFPGSSEHRAHRSSSTKARSKQKASKKARIVSSGKPNKQKAKIGKIVIKFG
KKKKRKPESSEELSDDEPPPPRRSKEDDSKRRSNRQVKRKKYAEDGETRVSDEETKVVVK
AKKANTGARKDPAVQLFVMENPSEEEGAVVDKIMNSRIAKKEVSPGVLVEVEEFFVKYKN
YSYLHCEWATEQHLEKDKRIQQKIKRFKIKQAQRAHFFADMEEDPFNPDYTEADRVLEVS
YCEDKDTGEPVVYYLVKWCSLAYEDSTWELKEDVDPTKIEEFKQLQAAKPDSRRMDRPPA
SLWKKREHSREYCNSNILRDYQLEGVNWLLFNWYNRRNCILADEMGLGKTIQSITFLEEI
QRTGIRRPFLIIAPLSTIANWEREFRTWTHINVIVYHGSMVSRQMLQQYEMYFRDAQGRP
IRGAYKFDALITTFEMILSGCPELNAIEWRCVIIDEAHRLKNKNCKLLEGFKLMNLEHKV
LLTGTPLQNTVEELFSLLHFLEPQRFPSESTFMSEFGDLKTEEQVQKLQAILKPMMLRRL
KEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLAKGAGQANLPNLVNTMMELRK
CCNHPYLIKGAEEKILEDFREVYNPVAMDFHLQAMVQSAGKLVLIDKLLPKMKAGGHKVL
IFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGG
LGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASL
KLGLDKAVLQSMSGRDNSLGGGGQVQQQLSKKEIEDLLRRGAYGAIMDDEDEGAKFCEED
IDQILQRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWDKWAKKAEIDMETVN
GRNSLVIDTPRVRKQTRPFSSTKDELAELSEGESDSEDKPKLRRPHDRLNSYGRTECFRV
EKNLLVYGWGRWKDILLHGRFKRPLSERDVEMICRALLAYCLVHYRGDDKIKSFMWDLIA
PTEDGQTKELKNHLGLSTPVPRGRKGKKMKIQSTGFDIQKAEWIRKHNPEHMLQDEGYKK
HLKHHCNKVLLRVRMLYYLKQEVIGSETQKVLDGVDASEILIRVPDPDNAELPTLWWDQD
ADKCLLLGVFKHGYEKYNTVRADPRLCYLDRVGRPDEKAIAAEQRGNDFMDGDVDDPEYK
PAPALMKDDMEDDASSPGDLVITDTGGEGSSAPEGGSTGAYWPSSSALTARLRRLITASQ
RFTKSRQILHIHQTQTVMPTPLCPLPATLNDTLNPKMAAKIERQQRWTRREEADFYRVVS
TFGVVFDPDLGRFDWTKFRAMARLHKKTDESLQKYLCSFTAMCRRVCRLPAKEADAVDPS
LSIQPITEERASRTLYRVELLRQVREQVLRHPQLYERLVLCQQGPDLPVWWEPGMHDRDL
LLGAAKHGVSRTDYHILRDPELAFMAAQRNYSQNKGMPPQQSQTVAHTHALAQAQAQAQA
QAHSRTPLLPPAHFQAAASASATTSTPSPLPASRSEEGAPSVKEEPDVGSEGGGEDPQSA
AAPAEMWGTPSLTGPPTPGMGQEEADVKPDVGKGGESERRMVAARTKPLTPNPTNPTNPP
NPASRKPKKAKKSRAEGKEPGTRRASGSESDSDGSSSSSSSRSSSSSSSSSSTSRSGSSS
SSSSSSCSSGSSSSSSSSSSSSEDSGSEAEDGQKNASVVPSVKGFDEDSVASHSTTQDET
QENSVAENGLAHPPHPFQGGYMLAASYWPKDRVMINRLDSICQAVLKGKWPGTRRAYEPG
STVASFYTTKLLDNHQVSAGSQAASSLPAEDPAASPQGSKVTKHVADKEFSVKINNEGSL
KLTFQKAGLPLKRPLEGEEGPLAQQQYLARLQELQSASDTSLRDFTKPPSATYPQGLAGQ
LRLNGVLDGQPVVKRRRGRRKNVEGMDLLFLNRSRAPVPPEQRVPPGWVGAAQASLPPPA
PGQQGFSPQAQGAPDTESRVSVINLKDGTRLAGDDAPKRKDLDQWLKEHPGFVADVGAFI
PGVNKMQFQDGRPKQKRHRCRNPNKIDVNSLTGEERVQIINRRNARKIGGAFAPPLKDLC
RFLQENPEYGVPPEWADVVKQSGYLPASMFDRILTGPIVPEEVSRRGRRPKNAMAKAASA
GANAGVSAAALGLNPLLANGLLTGLDLPSLQLLQQNLQQNLQSLQSLQLTAGLMGLPAAD
ATNLAAMFPMMLSGMAGLPNLLGMSGLLGKAQDGAGTAAAAAAAMAMATEDIPRKGSSKN
SAADPASSSQAPPSDTKAERTEAAVSESPAPPSVASTSSTTSAPSTCTSSSSPLSASAAS
AASGHPLALNPLLLSSMLYPGMLLTPGLNLPSVAPQTQSTANTDPITTTASSAPAPAPTP
MPTAQPTPPPATRLEYGAEEEEEQDEEEEEEEEEPAEQKENSGPEGSGKAESSSSESESS
SSSSDDSDSSDED
NT seq
9402 nt
NT seq
+upstream
nt +downstream
nt
atgacagatcccatcatggacttcttcgacgatcccaacctttttgtgggcggcttggag
gtgctatccgatgacgggttcaatgctggaccctctctggtggatgagctaaaccttgtc
cctgactttgagcctctacaggtggatccgatggggactgcgaagcacataaacatgatg
cagacccccgctcccacctcctcccagcaaggcctggcttacgcatcacagatggggcac
tttgacaccataaaggcccagagcaacatgggtcagccctactccggtgctgaaggcaac
agtggcttcatggctcagcagcctcagtttcaagggacacccatgggccaggcacctcag
gccaacggacttttcccgaacagcagccccatgtgggggaatcacgaccaaaacagaaac
gcataccacccactgtcccagcagcagcagcagcaacaacaacaacaacaacagcatcaa
caacagcatcaacgccagcagcagcatccgtgtcaacaaacgcaacaacagcaaccccat
ggacatcatcagctcctgaaccagcatcagcctcctcctccccaccagcaggtgaacccc
caggccatgcaccagcgtggcaagcccttccaggagcaccacaacttcgcttcctactac
cagggcaacatggcacagaaccagcagcagcagcagagccaccacggctccctgaacacg
gggggcagccccttccactgcggggtggtccccaatgcctcgccccagtccaagccgtac
agggacccctccaaccccatatcgtctgccccgcagcagcagcagggcggatacccagtt
cctcagcaggtgcagtcctaccctggtctggggactgaggaggccaacatggcctactcc
atgcagtcgtcccccatgcctcacgccctgtcctcctgttcggtcagcacgtctgcagca
gcaggctaccctccctctcagtactctttccctcgacagccggttgggatgggcgtgagc
cagcctctgtcttcgggagtggtgtccatgacaacgacctcctcggcccgcggagcgtct
gcgcatcctgtgcctgacctctcgagcagcagctgtccgttctcatcagcacccggattg
agtcagccacaaccacacccgcagcagcagcagcaacaacaacaacaacaacatcatcac
caacaacaacaacaacagcaacaacaacaacagaggcttaaggttgcagccaaccagtca
ggggagcagtgtcccttccgctccatgcagcggtccaagcctgcatacagcacatctgac
atgtaccctgaaactgccacctccttctctgccactgctgagagccatttcccccctcag
cagcagaggagctgccaggtgagcatgcctctgccccctgccaacaccaccagcaccagc
agcactaacgggggataccaggccatggagaaacacctgctgcacgagactcagggtggc
ggctttgaggggctggaggcccctgatctcctggacgaggacttcctgccccagctggag
gctgccctgagccagcacgagggctccaactgctcctggactaatgggagccagggagag
ggagacaaggaggaccaggaggaccaggaagaggaagcactctccattcactatgagatt
cagcctcccaagaacactaatggttccagcagtcaggtacgggtcctcagcccacagatg
aagagcggctcgtcttcctcatcctcgtcttcgtcttcgtactcctcggcctccgagcgg
cgggcccagaagcggcaacagcagctgcagctgcagcaacagcaacagcaacagcaggcc
caggcacaggcccaggcacaggcccaggctcagcaggcgatggactcggacgacaagcag
gagaaggccaaccggatcatctctgaggccatcgccaaggcgcgcgagcgcggcgagaag
aacatcccgcgcgtcatgagccccgacagcttccccggctcgtccgagcaccgggcccac
cgcagctcctcgaccaaggcccggtcaaagcagaaggcctccaaaaaggcccgcatcgtc
tcgtccgggaagcccaacaagcagaaggccaaaatcgggaagatcgtcatcaagttcggc
aagaagaagaagcgaaagccggagtcctcggaagagctatccgacgatgagcctcccccg
ccacgtcgctccaaggaggatgactcgaagcggaggtctaaccggcaggtaaagaggaag
aagtatgcagaagatggcgaaacacgcgtgtcggatgaggaaacgaaggtcgtagtcaaa
gccaagaaggccaacactggagcacgcaaagaccctgctgtgcaactgtttgtgatggag
aacccaagtgaagaagaaggtgccgttgtcgacaaaatcatgaactcacgcattgccaag
aaagaggtctctcccggtgtgctggttgaagtggaggagttctttgtaaagtacaaaaac
tactcttatctccattgtgagtgggccacggagcagcatctggagaaggataagaggatc
cagcagaaaatcaagcgcttcaaaataaagcaggcgcagcgagcacacttcttcgcagac
atggaggaggaccccttcaacccggactacacggaggcagaccgggtgcttgaggtgtcc
tattgtgaggacaaggacactggagagccggtggtgtactacctggtgaagtggtgctcc
ctggcgtatgaggacagcacgtgggagctgaaggaagatgtggacccgactaagatagag
gagtttaagcagctgcaggcagccaagccagactcacgcaggatggatcggcccccggcc
agcctgtggaagaagcgcgagcactcaagggagtactgcaacagcaacatcctcagggac
taccagctggagggggtcaactggctgctcttcaactggtacaacaggcggaactgcatc
ctggcggatgaaatgggcctgggcaaaaccatccaatccatcacattcctggaggagatc
cagcgcacgggcatccgtaggcccttcctcatcatagcgccgctctccaccatcgccaac
tgggagcgcgagttccgtacgtggacccacatcaacgtcatcgtctaccacggcagcatg
gtcagccgtcagatgctgcagcagtacgagatgtacttcagggacgcccagggccggcca
atcagaggggcgtacaagttcgatgcgttaatcaccacctttgagatgatcctgagtggc
tgcccggagctcaacgccatcgagtggcgctgcgtcatcatcgacgaagcccaccgcctc
aagaacaagaactgcaagctactcgagggcttcaagctcatgaatctggaacacaaggtc
ctcctgacgggcaccccactgcagaacactgtggaggagctcttcagcctgctgcacttc
ctcgagccccagcgcttcccctctgaaagcaccttcatgtcggagtttggggacctcaag
accgaggagcaggtccagaagctgcaggctatcctcaagcccatgatgctcaggagactg
aaggaggatgtggagaagaagctggctcccaaagaggagaccatcatcgaggtggagctg
accaacatccagaaaaagtactaccgcgccatcctggaaaagaacttctccttcctggcc
aagggcgctggccaagccaaccttcccaacctggtcaacacaatgatggagttgaggaag
tgctgcaaccacccctacctcattaaaggggccgaagagaagatcctggaagacttccgc
gaggtctacaaccccgtcgccatggacttccacctgcaggcaatggtccagtctgcgggt
aaactggttctcattgacaagctgctgcccaagatgaaggccggtggtcacaaggtcctc
atcttctcccagatggtgcgctgcctggacatcctggaggactacctcatccagagaaga
tacctctacgagcgaatagacgggcgagtgcgcgggaacctgcggcaggcggccatcgac
cgcttcagcaagccggactcggaccgctttgtgttcctgctgtgcacgcgggccggagga
ctgggcatcaacctgaccgccgccgacacctgcatcatcttcgactcggactggaaccca
cagaacgacctgcaggcccaggctcgctgccataggattggtcagaacaaggcggtgaag
gtgtaccggctgatcacgcgcaactcgtacgagagggagatgttcgaccgggccagtctc
aagctgggcctggacaaagccgtgctgcaaagcatgagtggacgggacaacagcctgggc
ggcggggggcaggtccagcagcagctctccaagaaagagatcgaggacctgctgcgccgt
ggggcctacggggccatcatggacgacgaggacgagggagccaagttctgcgaggaggac
atcgaccagatcctccagcgcagaactaagaccatcaccatcgagtccgagggacgaggg
tccacctttgccaaggccagtttcgtagcatcagggaaccgcacggacatctctctggac
gaccccaacttctgggacaagtgggccaagaaggcagagatcgacatggaaacagtcaat
ggcagaaacagcctggtgatcgacacgcctcgcgtgaggaagcagacgcggcccttcagc
tccactaaggacgagctggcggagctgtcggagggcgagagcgacagcgaggacaagccc
aagctgcgccggccccacgaccgcctcaacagctacggccgcaccgagtgcttccgcgtg
gagaagaacctgctggtgtacgggtgggggcgttggaaggacatcctgctgcatgggcgc
ttcaagcgaccgctgagcgagcgcgacgtggaaatgatctgccgtgccctgctcgcctac
tgcctggtgcattaccgtggtgacgacaagatcaagagcttcatgtgggacctgattgcc
cccactgaggacggccagaccaaagagctcaagaaccacctaggcctctccacgccagtg
cctcggggcaggaaggggaaaaagatgaagatccagtcgacaggcttcgacatccagaag
gccgagtggatccgcaagcacaaccccgagcacatgctgcaggatgaaggctacaagaag
cacctcaagcaccattgcaacaaggtgctgctgcgagtcagaatgctctactacctgaaa
caggaggtgatcggctcagagacgcagaaagtgctggacggcgtggacgccagtgaaatc
ctgatccgggtgcccgatccggataatgctgagctcccaactctctggtgggaccaagat
gccgacaagtgtctgctgctaggagtcttcaagcacggttatgagaagtacaacactgtc
cgcgcagacccgagactctgctacctagaccgggtgggccggccagacgagaaggccatc
gccgccgagcagagaggcaacgacttcatggacggggatgtggatgaccccgagtataag
cctgccccggccttgatgaaggacgatatggaggacgatgcctcctcgcccggagacctg
gtcatcacagacacaggaggagaaggcagctcggccccagagggcgggagcaccggggcg
tactggccgtcgtcctccgccctgacggcccggctgcgtcgtctcatcaccgcctcgcag
cgcttcaccaagagccgccagatcctgcacatccaccagacccagaccgtgatgcccacg
ccactgtgcccgctgcccgccaccctcaacgacaccctcaaccccaagatggcagccaag
atcgagaggcaacagaggtggacccggcgagaagaggccgacttctaccgcgtggtgtcc
actttcggcgtggtgttcgacccggacctgggccgcttcgactggaccaagttccgggcc
atggcgcgcctgcacaagaagacagacgagagtctgcagaagtacctgtgctccttcact
gccatgtgtcgcagagtgtgccggctaccggccaaagaagcggacgcggtggacccctct
ctgtcgatccagcccatcacggaggagcgcgcctcccgcaccctgtaccgcgtggagctg
ctgcgtcaggtgcgcgagcaggtgctgcgtcacccgcagctgtacgagcgcctggtgctg
tgccagcagggcccggacctgcccgtgtggtgggagcccggcatgcacgaccgcgacctg
ctgctgggcgccgccaagcacggcgtcagccgcaccgactaccacatcctgcgcgacccc
gagctggccttcatggccgcccagcgcaactacagccagaacaagggcatgccgccacag
cagagccagacggtggcccacacgcacgccctcgcccaggctcaggcccaggcccaggcc
caggcgcactcgcgcaccccgctgctgccccccgcacacttccaagcagcagcctccgcc
tctgccaccacctccacaccgtcacccctgcctgcctcgagatccgaagagggcgcgccg
tctgtgaaggaggagcctgatgtgggttccgaggggggcggagaggatccccagtcggcg
gcggcaccggctgagatgtggggcactccttccctcacaggaccccccacgcccggtatg
gggcaggaggaggcagatgtgaagcccgacgtggggaaaggtggggagagtgagcggcgc
atggtggcggcccgcaccaagccactgacgcccaacccaaccaacccgaccaacccgccc
aacccggccagccggaagccgaagaaggccaaaaagagccgggctgagggcaaggagccg
ggcacccggcgtgcatccggctccgagtcagactcagacggctcgtcctccagctcttcg
tcgaggtcgtcctcctcttcctcctcctcatcctccacctcgcgctcaggctctagctca
tcctcctcctcgtcctcttgctcctcaggatcatcctcctcatcttcctcatcctcgtct
tcgtcagaggacagtggcagtgaggcagaggatggacaaaagaacgcgtcagtggtgccc
agtgtgaagggctttgacgaggacagcgtggcgtcgcacagcaccactcaggacgagacg
caggagaacagcgtagcggagaacggcctcgcgcaccccccgcaccccttccagggaggg
tacatgctcgccgcctcctactggccaaaggaccgcgtgatgatcaaccgcttggacagc
atctgccaggccgtgctgaaggggaagtggcccggcacgcggcgcgcctacgagcccggc
tccaccgtggcctccttctacaccaccaagctgctggacaaccaccaggtgtcggcgggc
agccaggcggccagcagcctccccgctgaagaccctgcggcctccccgcaagggtcaaag
gtgaccaagcatgttgcagacaaggagttctcagtcaaaatcaataacgagggcagtctg
aagctgaccttccagaaggctggtctgcccctcaagaggcccctggagggagaggagggg
cccctggcccagcagcagtacctggcccggctccaggagctccagagtgcctccgacacc
agcctcagagacttcaccaaaccccccagcgccacctacccacaaggcctggcaggtcag
ttgaggctgaacggcgtgctggacggtcagccggtggtgaagcgaaggcgggggaggagg
aagaacgtggagggcatggacttgctcttcctgaacaggagccgggcaccggtgccgcct
gagcagcgggtccctccaggctgggttggcgctgcccaggctagtttgcccccgccggcc
cctgggcagcagggctttagtccccaagctcagggggcccccgacaccgaaagccgggtc
tccgtcatcaacctgaaggacgggacccggctggccggagacgacgcgcccaagaggaaa
gacctggaccagtggctcaaagagcacccaggcttcgtggcagacgttggagccttcatc
cctggggtgaataagatgcagttccaggacggcaggcccaagcagaagaggcatcgctgc
cggaaccccaacaagatcgacgtcaacagcctgacgggcgaggagagagtgcagatcatc
aaccggagaaatgcacgcaagattggtggtgcctttgcccctcccctgaaggacctgtgc
cggttcctgcaggagaacccggagtacggggttccaccggagtgggctgatgtggtcaaa
cagtcgggttacctgcctgcaagtatgtttgaccggatcctgactggtcccatcgtcccg
gaggaggtgagccgacgcggccggcggcccaaaaacgccatggccaaggccgcctcagcg
ggggccaacgccggagtgtccgccgctgccctgggcctcaaccctttgctggccaacggg
ctgctgacgggcctggacctgcccagcttgcagctcctgcagcagaacctccagcaaaac
ctgcagagcctccagtccctgcagctcaccgcgggcctcatgggcctgcctgctgccgac
gccaccaacctggctgccatgtttcccatgatgctctccggcatggcggggctgcccaac
ctgctggggatgagcggcctgctgggcaaggcgcaggacggagcggggacggcggcagcg
gcagcggcagccatggcaatggcaacagaagacatcccacggaagggcagcagtaagaac
tcagcggccgacccagcttcctcttcccaggccccgccctccgacaccaaagctgaaagg
acagaggctgccgtctcggagagccccgcccctccaagcgtggcctccacctcctccacc
acctccgccccctccacctgcacctccagctccagcccactaagtgcttctgctgccagc
gcggcctccggccacccgctcgcccttaacccgctcctgctctccagtatgctctaccca
gggatgctcctcactccaggccttaacctcccctctgtggctccccagacccagagcaca
gcaaacactgatcccatcaccaccacggcctcctccgcccctgcccctgctcctacgccc
atgcccaccgcacagcccacgccgcctcccgcaacccggttggaatacggggccgaggag
gaggaggagcaggacgaggaggaggaggaggaggaggaggagcctgcagagcagaaggag
aacagtggtccagagggctcggggaaggcggagtcctcttcctccgagtcggaaagctcc
tcctcatcatctgacgattctgactcgagcgatgaggactga
DBGET
integrated database retrieval system
