Clupea harengus (Atlantic herring): 105899764
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Entry
105899764 CDS
T09045
Symbol
irx5a
Name
(RefSeq) iroquois-class homeodomain protein IRX-5a
KO
K24889
iroquois-class homeodomain protein IRX
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105899764 (irx5a)
Transcription factors [BR:
char03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
105899764 (irx5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
PGA2
Motif
Other DBs
NCBI-GeneID:
105899764
NCBI-ProteinID:
XP_012682429
Ensembl:
ENSCHAG00000000301
UniProt:
A0A6P3VVL4
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Position
6:16639543..16645936
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AA seq
447 aa
AA seq
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MAYPQGYLYQPSASLALYSCPAYSTSVISGPRTEELGRSSSGSAFAPYAGSTAFTSASPG
YNSHLPYSADAAAAATFTSYVGSPYDHTTGMAGSIGYHPYAAPLGSYPYGDPAYRKNATR
DATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWTPR
NRSEDEEEDENIDLEKNDDDEPNKPSDKGDSTDTESDNKLINPGDMSCERFKDESHAKEM
DPLLTNTELKQSEDRTELLPESAKPTTSSPSTVPRGNEIIAQVKPSDLGHAPSTVNSNVT
SVIHSPPSAPKPKLWSLAEIATSSDRCKSSSEGPQATVMGQSTVITTNAASPSRSSSQCH
LPNSTVLSRPIYYTSPFYPGYTNYGTFGHLHSNHGSNTGSTPHFNGLNQTVLNRAEALVR
ESKIRSQTQIDLCKDSPYELKKGMSNI
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggcgtatcctcagggctacttgtaccagccatccgcctccctggcactgtactcatgt
ccggcgtacagtaccagcgtgatttcgggaccccgaacggaggaactgggaagatcatcc
tcggggtctgcttttgctccgtatgccggatctactgcgtttaccagcgcctcgcctggc
tacaactcccatctgccgtacagtgcagacgcagcggcggctgccacatttacttcatat
gtgggttcgccctacgatcacacaaccggcatggctggttcgataggctatcacccgtac
gctgctcccttgggttcctatccgtatggtgaccctgcttaccgaaagaacgcgactcgg
gatgctactgctacgctcaaagcgtggctcaacgagcaccggaaaaatccgtaccctacc
aagggtgaaaagatcatgctggccatcatcaccaaaatgaccctcactcaagtgtccacc
tggttcgccaacgccaggaggaggctaaagaaggaaaacaagatgacctggactccccgg
aaccggagcgaggacgaggaggaggatgagaacattgatctggagaaaaacgacgacgac
gagcctaacaagccttcagacaagggagactcgacagatactgagtcggacaataaactg
ataaacccaggggacatgtcatgcgagagattcaaagatgaaagtcatgctaaagaaatg
gatcctcttttaaccaacacggaattaaaacagtcagaggaccggacggaactgctgccc
gagtcggctaagcccaccacctcctctccgtctactgtgcctcgggggaatgagatcatt
gcgcaagtgaagccgtcagatttgggccacgcaccgagcacagtaaacagcaacgtgacg
tctgttatccattcgcccccgtcggcccccaaacccaaactttggtctctagccgagatc
gcgacatcctcagacaggtgtaaaagcagcagcgaggggccgcaggccacggtgatgggt
caaagcacagtaatcacgaccaacgctgcgtcgccatctcgatcatcttcccaatgtcac
ctcccaaatagcacggttctctccaggcccatctactacacttcccccttttaccccggt
tatacgaactatggcacttttggacatcttcacagtaatcacggatccaacacgggctcc
acgccacacttcaatggattaaatcagactgtgttaaacagagccgaggctctggtaaga
gagagcaaaatcagaagccaaacacagatagatctttgtaaagactccccttatgaacta
aagaaaggtatgtcaaacatttaa
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