Clupea harengus (Atlantic herring): 105899805
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Entry
105899805 CDS
T09045
Symbol
brca2
Name
(RefSeq) breast cancer type 2 susceptibility protein isoform X1
KO
K08775
breast cancer 2 susceptibility protein
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03440
Homologous recombination
char03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
105899805 (brca2)
03460 Fanconi anemia pathway
105899805 (brca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105899805 (brca2)
03036 Chromosome and associated proteins [BR:
char03036
]
105899805 (brca2)
03400 DNA repair and recombination proteins [BR:
char03400
]
105899805 (brca2)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
105899805 (brca2)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
105899805 (brca2)
DNA repair and recombination proteins [BR:
char03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
105899805 (brca2)
FA (Fanconi anemia) pathway
Downstream FA components
105899805 (brca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_helical
BRCA2
BRCA-2_OB1
BRCA-2_OB3
BRCA2DBD_OB2
BRCA2_TR2
Tower
RF-1
Motif
Other DBs
NCBI-GeneID:
105899805
NCBI-ProteinID:
XP_031429124
UniProt:
A0A6P8FRN3
LinkDB
All DBs
Position
9:8512857..8529806
Genome browser
AA seq
2759 aa
AA seq
DB search
MLTGSDGSKIVNQTVILQTQTCSQKRGTGMFEVFIYDTKKDLGPLTPNWFEELTAKASRK
DDSDVGEAMASGPSCHEDVAIKLPGVKAEIFLGSQTSTPKLLTKPLLASPEFLTEGTPAS
AQIFIESSPYLFGSAKESGPFKQQNSAVPKIVSEPEDTPKRFSSKVVQRISESLGAQINP
DLSWSSSLNTPSSLTPTFILSKREEPSSTVKTTEERVVFVRKLFPPIFKDDILPTSEEDR
LSTEKAKEDGELLTTVESVLDGTEEILSFFFTSRKAKTRERGGCTQSDGPFSDATRPGEI
SSPLKNRNCETTQWTPLSLSEISGSCSVESSLTNQHREHDYASQCHQQTSVVCVTDGQKS
QSELQLDAPQVFVSPLDAISAPSLSRKPKKFMYPVGDSASSRQDVRQRFYKPLHQSPTMP
CPDILKSGQSSESTKQQTGGQCQEVHRSRSQVVPSTTFEKDVDMTQLCKAFAEDFSQEEV
VQSRSPVRREEVVPCQGSSTPSGPEKNSDARTQPLCKQETDPINKQNSSHITGQHGILSQ
PDISNRRLVKVPQTGESKTLNHNNNTTSNGSHSTTGYEVSRSFTASQNQPFSGFKTASDK
IISFPQEAIERAKALLDEFAESDITDSPITALPSKDGSDNTKGTQDGRKRSHLSSRQQNT
TRQKNSTPHSPSDVSGFRTAADRRISVSSLSIWKAKKMLKELEDESTTDNLIGIKLKEAG
EKARDLKSVLDVTSISPPADACSPLTASQRADVSELCSLLEDANSQCEFTQVKPAKVNSS
KPPESVQQTGGKEWDPDILTGINFDDSFSTDIEHHMPVQKGSVKLNKALQVKVQNMSVGE
MSSQSENIPVSVDFKIDLNASVKNLIPALGYSDDLDRSHKSHAEKVNRQNVMIRNPEFPD
SSSTESSLDNCSSDTVFFIKKTPKSVLSRTRQSEDEDILGKTIVKMNSSITLNSAGSCSE
ESFCGFRTAGGRKVHVSETALLQAKALLSHHTESDDTESGVESKGYINATTHDDETRLSG
TQSAQEASTGCGVVTPHRLKTNITGSSLKAFSGGPSCGGFNTDGAQMVSVSVEESPKAWN
LDKDSQSYECVSNAHNASTVTQNAEIKPGGGYKTVSKDVVCVSNKAHQAAVTLRDCAGCA
VNSTCIEAKPDAPLESNLMGCDPDKRNTGFRTAGGKSVFVSEEVLSKAKSILSDFLENGH
DEFDFTKSSVKTSPVTKNSVFYTDIGKMSVSGKPTQEAMDLFRDCDKPEKMEHCSNTGTG
HSDSGKSFGFSTASGKRMSVSSTALQKGKTLLDECVQPQGQEHMNGSTVKLPPVQRHSGQ
HSLGFSTASGKGISISAESVQAAKALLTDCDTSSETNWIKTEHAHKNSSVKNDAGSPRGI
KTEDLMTETGAMNISEHSLGNPRVNHCGFSTASGKLVSVSNTAVQHAKLLFDEGPKPEDT
EPIMGVALQHEKQMNRQDTSLSFHTASGKGLSIPAKSLKAAHAIFDDCSEVPMEIMQRIP
AANCGRSTENNCHTDPEANNVGSCLNITTETAQNGDTKHGEHSSISFGFSTASGKGVSVS
KKALKEACKQLEQCVDDTLPERNTDFKPGKTGSSSGKLCLDAPPDPERNQCNSSFLSGHT
KRDSSGLSFQSDNLSSCTTTQERYFEQEAMACAKALLEDEDLHDAALHVTSGASQVNPHV
EKRLSGKRDLENDDSKDQPPLKRRLLAELNKSSNRPLLVPLKSSPTGVLSDRTVRCNVLL
QPNITQPHRITVAPKRINDEPELTTSESSCAKQFGERVPMFVPPFRKQTNPERQKGERSV
DHSAPSVFVPPFKSKVNDSKSPFHPAAESEGHTEVHAKCSGFVPVIKKTCPQAEACFQDH
FTPLDSSHGRILPCEDRDDFNHSDEHALNHEAPNRDVPTAGLKSPTPSGLKSSTPSEEAL
RCILLARDMQDMRIRKKKRQTIRPLPGSLFLAKTSGVARVSLRATVGYKCPRRHPEKLLY
VYGVPSEVVQVNSGSAKSFQFLWEHFFKSEALSQAGGVQLADGGWLIPDHRGMLGKEQFY
RALCDTPGVDPGLISEEWVYNHYRWIVWKRASMERAFPQELGGLCLTPEQVLLQLKYRYD
VEVDKSQRSALRRITERDDTPAKTLVLCVCGVETSGTASKTEGPVAALWLTDGWYTLRAL
LDPPLTALLQRGRLSVGDKLVTHGAELVGSQDACPPLEAPESLMLKISANSTRPARWDAR
LGYHRDPRPFQLPLGTLFSDGGVVGCVDTLVLRCYPMQWMEKTAGGVFIFRSERAEEREA
RSHEQRKQKAMEALFSRIQAHLEEEEQGKRKTRNQKRALSRREMEALEDGEELHEAMQSN
PTYVQADLREEQLSSLCSFRRLLDERRQVQLQERVRKALEEAQQGSANCHSRVVTPVWKL
AVCDSTRQQSSSSSSSKGSVFLLNIWRPSMELLSLLKEGGRYRTYHLSTSVGKRKATTAA
IQLTATKKTYFENMKVLPEMLRECFEPRQCASFNSLQNPLFHSPCGEVDVVGYVIYIADR
NGASPALYLVDEKVDFVSVRCSGPLRQLAVEELVKPLALLIVSNALLRQASAPIPALYAG
DFTLFRTSSSEPHIQERMRQLKSFVQSLEHFSKGAEEKLSSLIPMHGSSIQPCPKPLGGT
SDLCKPPPFLEPVTPVGKRTLAASASEGKQPKNLKRRRGFEYLSRIPSPPPLNPLGTVMS
PHVKKTFNPPRRSEILSPMSKTPIPSPRVPNLLPSEDEWVKDEELALIDTQTLLDGLVK
NT seq
8280 nt
NT seq
+upstream
nt +downstream
nt
atgttgactggttcagacggaagcaaaatagttaatcaaactgtgattttacagacacaa
acctgcagtcaaaaacggggcaccggcatgtttgaagtgttcatatatgacaccaagaag
gatttggggcccctgacccctaactggtttgaggaactgactgcgaaagcatcaagaaaa
gatgactcagatgtgggagaagcgatggcttctggaccatcatgccacgaagacgtcgcc
attaaactccctggagttaaagctgaaatatttctgggcagtcagacgtctacacccaag
ctccttacgaagccattactcgcctctccagaattcttgacagaaggaacccctgcatct
gcacagatcttcattgagtctagcccatacctatttgggtcagcaaaagagagcgggcct
ttcaaacaacaaaacagtgcagtgccaaaaatagtcagtgaaccagaggacacacctaaa
agattttcgtctaaggttgttcagcggatttcggaaagcctcggtgcccagatcaatcct
gacttgtcctggagcagttctttgaacaccccttcgtctctgacgcccaccttcatttta
tctaagagagaagaaccaagctctacagtcaagactactgaggaaagggttgtttttgtg
cggaagctttttcctcccatcttcaaagatgacatcttgccaacatcagaagaggatagg
ctgtccactgagaaggctaaagaggatggagaactgctcaccaccgtagagagtgttctt
gatgggactgaggagatcctgtccttcttcttcaccagcaggaaggcgaagaccagagag
cggggtggatgcacacagtcagacgggccctttagtgatgccaccaggccaggagagatt
agcagtcccctgaagaacagaaactgtgaaactacacagtggactcctttaagcttgtct
gagatttcaggctcgtgctcagttgagtcatccctcactaaccagcatcgtgaacacgac
tatgcctctcagtgtcaccagcagacatctgtagtgtgtgttactgatgggcagaaatcc
cagtcagaattacagctggatgcacctcaggtgtttgtttccccactggatgccatatct
gcaccttccttgtctaggaaacccaagaagtttatgtaccctgtaggagactcagcatct
tcaaggcaagatgtcaggcagcggttctacaaaccacttcatcagtctcctacaatgcca
tgccctgacattcttaaaagtggacaatcctctgaaagtacaaaacagcaaacaggaggg
cagtgtcaagaagttcacagaagcagaagtcaggttgttccttctaccacttttgaaaaa
gatgttgacatgacacagctgtgcaaggcatttgcagaggactttagtcaggaggaggtt
gtccaaagcagatcacctgtgagacgtgaggaggtggtgccgtgccagggctcctccact
ccatctggtccagagaagaattcggatgctagaacccaaccgctgtgcaagcaagagacc
gaccccatcaataagcaaaatagctctcacatcacaggacagcatggcatcctgtcacag
ccagatataagtaacagacgtctagttaaggttccccaaacaggagagagtaaaacactc
aaccacaacaacaacacaacctccaatggtagccattcaacaacaggttatgaagtttcc
aggagtttcacagcttctcaaaaccaacctttttctggtttcaaaacagccagtgacaag
attatatcctttccccaggaggccatagagagggcaaaggccttactggatgaatttgca
gaatctgacatcactgactctcccatcactgccctacccagcaaagacggatcagacaac
actaaaggcactcaggacggtagaaagaggagccatctcagctcaaggcagcagaacacc
acacgccagaagaacagtactccccattccccttcggatgtgtctggtttcagaactgca
gcagacagaagaattagtgtttcttcattgagtatctggaaagccaagaaaatgctcaag
gaattagaagatgaatccaccacagacaacctcattggaatcaaattaaaggaggctggt
gaaaaagcacgagacctgaagtcagtactggatgtgacgagcatatccccaccagcagat
gcttgttcccccttaacggcatcacaaagagccgatgtgtccgagctctgcagcctgttg
gaggatgccaacagccagtgtgagttcacgcaggtcaaaccagccaaggtgaactccagc
aaacccccggaatctgttcagcagactggagggaaagaatgggacccagacattctgacg
ggcatcaacttcgatgatagttttagcactgacatagaacatcatatgcctgtacagaaa
ggtagtgttaaattaaacaaagctttacaggtcaaggttcaaaatatgtcagtaggtgaa
atgtcatcacaatcagaaaacataccagtttctgtagattttaagattgatttgaacgct
tctgtgaaaaatctaataccagcactgggctattctgatgatttagatagaagtcacaaa
agccatgctgaaaaggtgaataggcaaaatgtcatgatcaggaatccagagttccctgac
agctctagtactgagtcatcattggacaactgtagctctgacactgtttttttcatcaag
aaaacccccaaatctgtcctcagtagaactaggcagtctgaggatgaagatattcttggt
aaaactatagtgaagatgaactccagtataacactcaattcagctggttcttgctcagag
gaaagcttctgtggattcagaaccgcgggaggcagaaaagtgcatgtgtctgaaacggca
ttactccaggcaaaggcacttctgagtcaccatactgagtctgatgacacagaatctggg
gtggagtccaaaggttatataaatgccacaacacatgatgatgaaacaaggttaagtgga
actcagtcagcacaggaggcgtctacaggttgtggtgttgtcacccctcacaggctgaaa
acaaacattactggaagttcgctcaaagcttttagtggtgggccatcatgtggtggcttc
aacacagacggtgctcagatggtttctgtgtctgtagaggaatcaccaaaggcctggaat
ctggataaggatagtcagtcatatgagtgtgtatctaacgcacacaatgcaagtacagtg
actcagaatgctgagataaaacctggaggagggtacaagactgtaagtaaggacgttgtg
tgtgtttcaaacaaggcccatcaggcggcagtgactttaagagactgtgctggatgtgcc
gtgaattcaacctgcatagaagcaaaaccagatgctccattggaatcaaatttgatgggt
tgtgatccagacaaaagaaacactggtttccgaactgctggggggaaatctgtgtttgtg
tctgaagaagtgctgtcaaaagcgaaaagtattttgagtgactttctagagaatggccat
gatgagtttgattttacgaagtcttcagtaaaaacttctccagttactaaaaattcagtt
ttttacacagatataggtaaaatgtcagtttctggaaaacctactcaggaggctatggat
ttgttcagagattgtgataagccagaaaaaatggaacactgtagcaacacgggaacgggc
cacagtgattcaggaaaaagctttggatttagtacagcgagtgggaaacgtatgtctgta
tcaagtactgctcttcagaaaggaaagacacttttggatgaatgtgtgcaaccacaaggc
caagaacatatgaatgggtccacagtgaaacttccaccagtgcaaagacacagtgggcag
cacagtttaggtttcagcacagcaagtggtaaaggaatatctatttcagctgagtcagtt
caagctgcaaaagcattattaactgactgtgatacatcatcagaaacaaactggattaaa
actgaacatgcccacaaaaatagttcagtgaaaaatgatgctggcagtccccgtggtatt
aaaactgaggacttgatgactgaaaccggagccatgaatatcagtgaacattcactcggt
aacccaagagtcaaccattgtgggttcagcacggcaagtggcaaacttgtatccgtgtcc
aacactgctgtccaacatgccaagctcttgtttgatgaaggcccaaaaccagaagacaca
gagcccataatgggtgttgcactgcagcatgaaaaacaaatgaatcggcaggacacaagt
ctgagttttcacacagcaagtggcaaaggtttgtccatacctgcaaagtcacttaaagct
gcacatgctatatttgatgattgcagtgaagttccaatggaaataatgcaaagaatccct
gctgccaattgtggaagaagcacggagaacaactgtcatactgatcctgaggcaaacaac
gttgggagttgtcttaacatcacaacagagactgcccaaaatggagacacaaaacatgga
gaacattcaagcataagttttggatttagcacagcaagtggtaaaggtgtctctgtgtca
aagaaagctttgaaggaagcatgtaagcagttagagcaatgtgttgatgatacactccct
gaaagaaatactgactttaaaccaggaaagaccggcagttccagcggcaaactgtgtctg
gacgcacctccagaccctgaaaggaaccagtgcaacagttccttcctgtcaggacacact
aaaagagactcctctgggttgagctttcagtcagacaatctgagcagttgcaccaccacc
caggaaagatacttcgaacaggaagctatggcctgcgccaaggccttactggaggatgag
gatcttcatgatgctgctctccatgtaacatcaggtgcaagtcaagtaaatccacatgtg
gaaaaaagattgagtgggaaacgagatttggaaaatgacgattccaaagatcagccacct
ttgaaaagacgtcttctagcagagcttaacaagtcatcaaatagacctcttcttgtacct
ttaaaaagctcccctactggtgttttgagtgataggacggtaagatgcaatgtgctacta
cagccaaatatcactcaaccacataggattactgtggcaccaaagaggataaatgatgag
ccagagctgaccacttctgagtcatcctgtgccaaacagtttggggaaagggtccccatg
tttgtgcccccctttagaaaacagactaatcctgaacgacagaaaggggagagatcagta
gaccatagtgcacccagtgtttttgtgccaccgttcaaatcaaaagttaatgacagcaaa
agcccatttcaccctgcagctgagtctgaaggccacactgaggtgcatgctaaatgcagt
gggtttgttcctgttattaaaaagacttgccctcaagctgaggcttgctttcaggaccac
ttcacccctctggattcaagccatggcaggattcttccatgcgaagatagggatgatttc
aaccacagtgatgagcatgccctcaatcatgaggcaccaaacagagatgtacccactgca
ggtcttaaatcacctaccccttcaggtcttaaatcatctaccccttcagaggaagcctta
cggtgcatactgctggccagagatatgcaggacatgaggatcagaaagaagaaacggcag
acaatcagacctcttccaggaagcctcttcctcgcaaagacgtctggcgttgccagagtc
tccctccgagccaccgtgggatacaagtgcccaagacggcacccggagaaattgttgtat
gtgtatggagtgccctctgaggtggttcaggtcaacagtggcagtgctaagtccttccag
ttcctgtgggagcacttcttcaagtcggaggcgctcagccaggctggtggagttcagctg
gctgacggaggctggctcatcccagaccacagaggaatgctgggaaaggagcagttctat
agagcactgtgtgatactcctggtgttgacccagggctgatcagtgaggaatgggtgtat
aaccactaccgctggatcgtgtggaagagggcctccatggagagagcctttccccaggag
ctgggtggcctctgcctcactccagagcaggtgctactgcagctgaagtacaggtatgat
gtggaggttgacaagagccagagatcagccctgaggaggatcacagagagggatgacact
ccggccaagacattggtcctgtgtgtgtgtggtgtggagacctctgggacagcctccaag
actgaggggccggtagctgccctctggctgacggacggctggtacacactcagggccctg
ctagaccctccccttactgccctgctgcagagggggcgcttgagtgtgggagacaagctg
gtgacccatggagctgagctggtgggctctcaggatgcctgccctcctctggaggctcct
gagtctttgatgctgaagatttcagctaacagcaccagaccagcacggtgggatgcccgg
ctgggttaccaccgtgacccacggccgttccagctcccgctgggcaccttgttcagtgat
gggggtgtggtgggctgtgtggacacgctggtgttgaggtgttaccccatgcagtggatg
gagaaaacagctggaggggtgttcatcttccgcagtgagcgtgctgaggagagggaagcc
aggagtcatgagcagcggaagcagaaggccatggaggcgctcttcagccgcattcaggct
cacctggaggaggaggaacaaggaaagagaaagacaaggaaccagaaacgggctcttagt
cgccgagagatggaagctttagaagatggggaggagcttcatgaggccatgcagtctaac
cctacctacgtacaggctgacctgcgtgaggagcagctgtccagtctgtgcagcttcagg
cgcttgttggacgagaggaggcaggtgcagctgcaggagcgggtccgaaaggctctggag
gaggcacagcaggggagtgccaattgccacagcagggttgtcaccccagtgtggaaactt
gcagtctgcgactccacccgccagcagagcagcagcagcagcagcagtaaaggctcagtt
ttcctgcttaacatctggcgcccctccatggagctgctctccctgttgaaggaggggggc
agataccgaacctatcacctgtctacatcagtgggcaagaggaaagccaccaccgctgct
atccagctcactgccaccaagaaaacatacttcgagaacatgaaggttctgccggagatg
ttacgggaatgtttcgagccacgtcagtgcgcaagcttcaactctcttcagaaccctttg
ttccactctccctgtggggaggtggatgttgtgggatatgtcatctacatcgctgacaga
aatggtgcctctccagcgttgtacctggttgatgagaaggtggactttgtgtctgtacgc
tgctctgggcctctgagacagctggctgtggaggagctggtgaagcctctggccctctta
atagtgagcaacgccctcctccgtcaggcctcagcccccataccagccttgtatgcagga
gactttacactgtttaggactagctcttcggaacctcatatccaggagcgaatgaggcag
ctaaagagctttgtccagagcctagaacacttttccaagggtgcagaggagaagctctcc
agcctaatccccatgcatggctcatcgatccagccatgtccaaaacctctaggtgggaca
tctgatctctgtaagccaccaccctttcttgagcccgtcacccctgtgggcaagaggact
ctggcagccagtgcttcggagggaaaacagcccaaaaacctgaagagaaggaggggtttt
gagtacctgtcacgtatcccatctccccctcctcttaaccccctgggtactgtaatgtct
cctcatgtaaagaaaacgttcaatcctcctcggaggtctgagatactgtctcctatgagc
aaaacccctatcccatcaccacgagttcccaaccttcttccatcagaggacgagtgggtg
aaggatgaagagctagccttgatagacactcagactttgctggatggattagtcaaataa
DBGET
integrated database retrieval system
