Clupea harengus (Atlantic herring): 105899921
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Entry
105899921 CDS
T09045
Name
(RefSeq) C-myc promoter-binding protein-like isoform X1
KO
K20163
DENN domain-containing protein 4
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105899921
Membrane trafficking [BR:
char04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
105899921
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
uDENN
dDENN
PPR_2
DUF2464
PPR_3
PPR_long
PPR
Motif
Other DBs
NCBI-GeneID:
105899921
NCBI-ProteinID:
XP_031424874
Ensembl:
ENSCHAG00000011208
UniProt:
A0A6P8FGJ1
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All DBs
Position
6:complement(12238817..12285529)
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AA seq
1981 aa
AA seq
DB search
MLEDKGPRVADYFVVAGLTDPSKPQDEELRFDDVCHKTARPKAPITDVTVVMRSLGEEVP
PGYVCVETTPTGLSADLNNGSLMAPQIYLCYRRGRDKPPLTDLGVLYEWKERLKQGCHLV
QSTPGGRPANLSGSSQRVYVTYRRSPESQSHASLAVTDICVIIPGKGETPPHTFCKVEKN
LNSSMWGSSVFLCYKKSVAKTNTIAYKAGLFSRYPEEDYESFPLPESVPLFCLPMGATLE
CWPSHTKYSLPVFSTFVLTGSSAEKVYGAAIQFYEPFSEECLTDRQRLQLGLPTPDPQAV
SHSPTSDPKGVLRTIHTNKSICLLSHWPFFDAFRKFLTFLYRYSISGPHALPIEKHISHF
MHKVPFPSSQRPRILVQLSPHDSLMLSQPVSSPLPLSGGRFSTLLQSLGPENAVTLLVYA
ITEQKILVHSLRPAVLTSVTEALVSMIFPFHWQCPYVPLCPLALAGVLSAPCPFIVGLDT
RYFDLYEPPPDVNCVDLDTNTVSEMEDKRALTWKILPKKACKNLMNALSNLYQQLSEDHQ
RPRHDGLADAYMCVTESEVGSGRSLQSLELEIQEAFLRFMAALLRGYRSYLRPITQAPSE
KTTDASSLFDLQGFLRSRDRSHQKFYSAMVKTQLFSRFIEECSFVSDKDASLAFFDDCVD
KLFSSERTVEKAKVDGERSEEGRLIEFDESHRSEHTVFSTPPELPPLPEGEEHPLCYSYA
GFPVLTDDLFDRVDGLRTAASLLASRQSCPTSPAPMFRRTKQEIKLAQKVAKKYSSVPQM
WSKCLLRHCYGLWFICLPAYVKVCHSKVRALRTAYDVLRKMHTKKLQPPDEVCYRVLMQL
CGQYGQPVLAVRVLFEMKKAGVHPNAITYGYYNKAVLESTWPSSTRGGYFLWLKLRNVVL
GVAQFRQALKKNQQQFIQTPLSDGSDLDALSQGSMDSSNETNPTDLIKVETTDDRSSTAS
MGSVNGDSCAACSLGVCSDSDTPVLLSGDQSDLGYNSLSKEEVRRGETIPEKEKGESDCS
SFSETESAKGSGDCLPHLVFPEVSAPKQQRPGIVRGNCPYDGPAHKKQESSSDVAGLLFS
SSLEDIGVMQGGSLHRRLGNKREKTEGSLEQSGVRCRRHSGDSSTPTPTGTVLGLSLNQG
ETDPHKIACNLGDDAKILSGTLRKSRRPETLDVNSKHTHDAPRHALAHTEAEDADSSDEE
KADEDKVDNDLAAIFDLEDLDLDSEEIVGSGYGAGLRRQSMPARPAKRMGIQMGFDPLSL
LAAESGCEVQEVSSEGAGARTPPGVRRDLAEEIEMYMNHVGSPMSSRAPSSVDLRFPTSP
AGGTHETRRCSLPHCSSRALSVPRSHTFHTHQQVSHSHNSHAHRSRTPQANTPTHARARL
WSSPTCDPDAAPFRGERDLPSGLASPSPSPSPYSSSFGLDTLITPSLDVFKTSMVSAGKG
VAEKASRWYSRLATYTTPTKDMSSDRLSVLSGEEDEQDGEGEEVFLAPDGPFSPKRSGPH
GPLRRSPRRSPMHSRVQSPDPRSSFPRGSLNTGYLLSPPPSFDRSDLGSSRYTSNTSIFQ
NYAMEILISSCSRCKTCDCLVYDEEIMAGWTADDSNLNTICPFCGNPFLPFLNVEIRDLR
GPGRLFLKNSPSADEANWMNSSSYSVSTGLDTGTSTLSPTSPAPTRTQRSSSFCRAPYID
IPAERQQGSLSPGAPMARSVSAFGPLEESPRPLHRVPTGSLPSRLNEATDPLSMEWRLHH
PEPVTVPYLSPLVLWKELESLLENEGDQAITLSGLVDHHPIIFWNLVWYFRRLDLPSNLP
GLILTSDHCNRGSQCPASPVQVPRDWMSEDSKHVLVQILWDNLKLHQDPIQPFYILWNTQ
SLSYPMCRLGNDKESVFGEEVLQGVVRSIQRNDIHTPMCHILQLLAHTLGVHRQRSLYRD
ILFLSLVALGKDNIDIDAFDREYKLAYDRMSPALVKLTHNCDRPPSTGVMECRKTFGEPY
L
NT seq
5946 nt
NT seq
+upstream
nt +downstream
nt
atgttggaagacaaaggtccccgtgtagcagactacttcgtggtggccggtctgacagac
ccctccaagccacaggatgaggagctgcgcttcgatgacgtctgccacaagacggcgcgc
cccaaggcaccgatcaccgacgtcaccgtggtgatgcgctccctgggggaggaggtgccg
ccgggctacgtctgtgtggagaccacgcccaccggactgtcagctgatctgaataacggt
agtctgatggctccccagatctacctgtgctacaggcgcggccgcgacaagccccccctc
acagacctcggtgttctgtatgaatggaaggagcgcttgaagcagggctgccacctggtc
cagagcactcctggcggtcgccccgccaacctcagcgggtcgtcccagcgcgtttacgtc
acctaccgcagatcgcccgagagccaatcacatgcctcgcttgccgtgacggacatctgt
gtcatcataccaggaaagggcgaaactcctccacacaccttctgcaaagtggagaagaac
ctgaacagcagcatgtgggggtcttctgtctttctgtgctacaagaaatcggtggccaaa
accaacaccatcgcctacaaagcagggttgttcagcaggtacccagaggaggactacgag
tcgttccctctgccagagtcggtgcccctcttctgtctacccatgggagccacgctggaa
tgctggccctcccacaccaaatactccctccctgtcttctccacctttgtgctcacgggc
tcctcagcggagaaggtgtatggtgcggccatccagttctacgagcccttctccgaggag
tgcctgacggacaggcagcgtctgcagctgggcctgcccacccctgacccccaggccgtt
tcgcactccccgacctctgaccccaagggcgtcttgcgcaccattcacaccaacaaaagc
atctgtctgctctcacactggcccttcttcgacgccttccggaagtttctcaccttcctc
taccgctactctatctccgggccacatgctcttcccattgagaagcacatctctcacttt
atgcacaaagttcccttcccctcgtctcaaagacctcgcattcttgtacagctttccccc
catgacagtctgatgttgagccagcctgtgtcctctcctctgcccctcagcggggggcgg
ttctccacgcttcttcagagtctgggtcctgagaatgctgtcacgctgctggtgtacgcc
atcactgagcagaagatcttggtgcactccctacggcccgctgtgctcaccagtgttaca
gaggctctggtgtctatgatcttccccttccactggcagtgcccgtacgtgcccctgtgc
ccactggcgttagcaggggtgttgagcgccccctgccccttcatcgtcgggttggacact
cgctacttcgacctctatgagcctcctcctgatgtcaactgtgtggacctggacacaaac
accgtctcagagatggaggacaagcgtgctctgacgtggaagatcctcccaaagaaagcc
tgcaaaaacctgatgaatgcactcagcaacctctaccagcagctaagtgaagatcaccag
aggccgcggcacgacgggctggcagacgcatacatgtgtgtgacggagagcgaggtgggc
agcgggcgcagcctgcagtcgctggagctggagatccaggaagcctttctgcgcttcatg
gcggcgctgctgcgaggctaccgctcctacctgaggcccatcacacaggcgccctcggag
aagaccactgacgccagctcactcttcgacctgcaggggttcttgcgcagcagggatcgt
tctcatcagaagttctactctgcgatggtgaagacgcagctcttcagccgcttcattgag
gagtgctcctttgtcagcgacaaagatgccagcctggccttcttcgacgactgtgtggac
aaactgtttagctcagagcggactgtagaaaaggccaaggttgacggagagcgcagtgaa
gagggcagattgatagagttcgatgagtctcacagaagtgaacacactgtcttcagcaca
ccccctgagctcccacccctgccagagggagaggagcatccactctgctacagttacgct
ggcttccctgtgctgacggatgacttgtttgatcgtgttgatggcctgaggactgctgcc
tctctgcttgccagtcgtcagagctgccctacgagtcctgctcccatgttcagacgcacc
aaacaggagataaagctggctcagaaggtggctaagaagtactcgtccgtgccccagatg
tggtctaagtgcctgctgcgccactgctacgggctgtggttcatctgcctgcccgcctac
gtgaaggtctgccactccaaggtgcgggcactccgcaccgcttacgacgtgctgcggaag
atgcacaccaagaagctacagccacctgacgaggtgtgttacagagtgctgatgcagctt
tgtggtcagtatggccagcctgttctggccgtgagagttctgtttgagatgaagaaagct
ggcgtccatcccaatgccatcacctatggctactacaacaaggctgtgttagagagcaca
tggccatccagcaccagagggggctacttcctgtggctgaagttgagaaacgtggttctg
ggcgtggcccagttcagacaggctctgaagaagaatcaacagcagtttatacaaacacct
ctctcagatggcagtgacttggacgccctgagtcagggcagcatggacagctccaatgag
actaaccccaccgaccttatcaaagtagagaccactgatgatagatctagcacagccagc
atgggcagtgtgaacggggactcttgtgcagcttgctctctgggtgtgtgttctgattcg
gacacacctgttctgctctcaggtgaccagtcagatctgggctacaactctctgtccaaa
gaagaggtacgcagaggggagaccattcccgagaaagagaagggggagagtgactgcagc
tccttttctgaaaccgagagtgccaaaggcagtggagactgtcttccacatttggtcttc
ccagaagtctctgctcctaagcagcaacgtccagggatcgtccgtggcaactgtccctat
gatggtcctgcccataaaaaacaagaaagctcctcagatgtcgctggtctactcttttcc
tcctctttagaggacattggggtcatgcagggaggcagtctgcatcgtcgtcttggtaac
aaacgggaaaaaacagaagggtctctggagcagtcaggggtcagatgtcgtcgtcacagc
ggcgactcctccacccctacccccaccggcacagtcctgggcctgagcctgaaccagggt
gagacggaccctcacaagattgcctgtaacctaggagacgatgccaagatcctctcaggg
accctccgcaagagccggcgacccgaaacactggacgtcaacagcaaacacactcacgac
gcaccaaggcacgcactcgcacacacagaagcagaagatgcagactccagtgatgaggaa
aaggctgacgaggacaaggtggacaacgacctggcagccatctttgaccttgaagacctc
gacctggattcagaggagattgtgggtagcggctacggggcgggactgcggcgtcagtcg
atgccggcccgcccggccaagcgcatgggcatccagatgggcttcgacccgctgtccctc
ctggcggccgagagcgggtgtgaggtgcaggaggtgtcaagtgagggcgctggcgctcgg
actccccctggggtgcgccgcgacctggcagaggaaatcgagatgtacatgaaccacgtt
ggcagcccaatgagcagccgcgcgcccagcagcgtggacctgcgcttccccaccagccca
gcagggggaacccacgagacacggcgttgcagcctgcctcactgctcgtcccgggcgctg
tcagttccccgctcgcacaccttccacacgcaccagcaggtgtcccactcgcacaactcg
cacgcgcatcgctcgcgcacgccccaggccaacacccccacccacgccagggcccgcctg
tggtcctcgccaacgtgcgaccccgacgcggccccctttagaggcgagagagacctgccc
tctggcctggcctccccttccccctctccctccccgtactcctcgtctttcggactggac
acgctaatcacgccctcactggatgtcttcaagaccagcatggtgtcggcggggaagggt
gtggccgagaaggccagtcgctggtactcgcgcctggccacttacaccactcccaccaag
gacatgagctcagaccggttgagtgtgttgtctggggaggaggacgagcaggatggcgag
ggagaggaggtgtttttggcccctgacgggcccttctccccgaagcgctctggcccccac
gggcccctcaggcgcagcccccgccggagccccatgcacagccgcgtgcagagccccgac
cctcggtccagcttccctcgcggcagcctaaacacaggttatcttctctctcctcctcct
agttttgaccgctctgacctgggctcgtctcgatacaccagcaacacaagcatcttccag
aactatgccatggagatcctgatctccagctgctcgcgctgtaagacctgtgactgtctg
gtgtacgacgaggagatcatggctggctggacggcggacgactccaacctcaacaccatc
tgccccttctgtgggaaccccttcctacccttcctcaacgtggagatcagggacctgcgg
ggccccggcaggttgtttctaaagaatagtccatcagcagatgaagctaactggatgaac
tcctcctcttattctgtctccacggggctggacactggaacctccaccctctcccccacc
tcccctgctccgacacgcacacaaagaagcagttccttctgcagggctccatatatagat
atcccggcggagaggcagcagggctctctgtcccctggggcccccatggcgcggagcgtc
agcgcttttggacccctggaggagtcgccgcggcccctgcacagggtccctaccggcagc
ctgcctagccgtctgaatgaggccacagatccgttgagtatggagtggcgtctgcaccac
ccagagccagtgaccgtgccctacctgagccctctggtcttgtggaaggagctagagagc
ctgctggagaatgagggagaccaggccatcactctgtcagggctggtggatcaccatccc
ataatattctggaaccttgtctggtatttccgccgactagatctgcccagcaacctgcca
ggcctcatcctgacatcagaccactgcaatagaggatctcagtgccctgcctctcctgtg
caggttcctcgtgactggatgtctgaggacagtaagcacgtgctggtgcagatcctgtgg
gacaacctgaagcttcaccaggaccccatacagcccttctacatcctgtggaacacacaa
agtctgagttaccccatgtgtaggctggggaatgacaaggagagtgtgtttggagaggag
gtgctgcagggcgtggtgaggagcatccagcgcaacgacatccacacccccatgtgtcac
atcctccagctgctcgcacacaccctcggagtccacagacagaggagtctgtacagggac
atcctcttcttatctttggttgctttgggcaaagacaacattgacattgatgcgtttgac
cgtgagtataagctggcgtatgaccgtatgtctcctgctctggtcaagctcactcacaac
tgtgaccggccccccagcacaggggtcatggagtgcagaaaaacctttggagagccttat
ctctga
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