Clupea harengus (Atlantic herring): 105899964
Help
Entry
105899964 CDS
T09045
Symbol
gspt1l
Name
(RefSeq) G1 to S phase transition 1, like isoform X1
KO
K03267
peptide chain release factor subunit 3
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105899964 (gspt1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105899964 (gspt1l)
03012 Translation factors [BR:
char03012
]
105899964 (gspt1l)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105899964 (gspt1l)
Translation factors [BR:
char03012
]
Eukaryotic type
Release factors
105899964 (gspt1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
PAM2
MMR_HSR1
LPD34
DUF5096
Motif
Other DBs
NCBI-GeneID:
105899964
NCBI-ProteinID:
XP_012682655
Ensembl:
ENSCHAG00000017221
UniProt:
A0A6P3VVW4
LinkDB
All DBs
Position
1:5431884..5445147
Genome browser
AA seq
575 aa
AA seq
DB search
MDPRDTAPDSWEQEDDGEAPVDVQLSAFACLNVNAKPFVPNINAAEFVPSFGPKEPTENP
DSGGGDTVASMEIAEPVVAPLENGDAEMAVEETWEQKGAEPSEAEPGGGSGEDEVPTDDS
PQDEGMEDEEETPAPKVVPVPKDAPKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVEKRT
LEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSF
VPNMIGGASQADLAVLVISARKGEFETGFERGGQTREHSMLAKTAGVKHLIVLVNKMDDP
TVNWSLERYEECKEKLVPFLRKVGFNPKKDIHFMPCSGLTGANLKEPAEDMCSWYTGLPF
IPHLDSLPNLNRASDGPVRLPIVDKYKDMGTVVLGKLESGSISKGQQIIMMPNRQTVEVM
TLLSDDVETDDAGPGENLKLRLKGIEEEEILPGFILCTGENLCHTGRTFDAQIVIIEHKS
IICPGYGAVLHIHTCIEEVQITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTIC
LETFKDFPQMGRFTLRDEGKTIAIGKVLKLVAEKE
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atggacccgagagacacagccccggattcttgggaacaggaggacgatggcgaggccccc
gtcgacgtgcaactatcggccttcgcttgccttaacgtgaacgccaagccgtttgtccca
aatattaatgcggcagaatttgttccgtccttcggtccgaaagagcccacggaaaatcct
gactctggtggtggtgatacagttgccagcatggagattgcagaacctgtagtggctccc
ttggagaacggggatgcagagatggccgtcgaggagacgtgggagcagaaaggagcggag
cccagcgaagcagagccaggaggcgggtcgggggaagacgaggttccgacggacgactcg
ccacaggacgaagggatggaggatgaggaggaaacgccagcccccaaagtggttcccgtc
ccgaaagacgcccccaagaaagagcacgttaacgtggtgtttattggccatgtcgatgct
ggcaagtccacaattggaggtcaaatcatgtatctgacgggcatggtggagaagagaact
ctggagaaatacgagagggaagcaaaagagaagaacagggagacctggtacctctcttgg
gctctcgacacaaaccaggaggagagagacaaagggaagaccgtggaggttggacgtgca
tactttgagacggagaaaaagcactttaccatcctggatgccccaggccacaaaagcttt
gtccctaacatgattggcggggcatcgcaagctgacctggcagtgttggtgatctcggcc
aggaaaggcgagtttgagacaggctttgagaggggtggccagacacgggagcactccatg
ttggccaaaactgcgggagtcaagcatctgattgttctggtcaacaaaatggacgacccc
acagtgaactggagtctggagaggtatgaagaatgtaaggagaaacttgtgccatttttg
aggaaggtcggcttcaaccccaaaaaagacattcacttcatgccatgctctggactgacg
ggggccaatctaaaagaaccagctgaagatatgtgctcttggtatacagggttaccattc
attccacatctggacagtttgccaaacttaaacagagcaagtgacggaccagtgaggtta
ccgattgtagataaatacaaggacatgggcactgtggttcttgggaagctggagtcggga
tcaatcagcaaaggacagcaaattatcatgatgcccaacaggcaaactgtggaagttatg
actttgctctcggacgacgtggagacggacgacgcaggaccaggagagaacctgaagctg
cggctcaagggtatcgaggaggaggagatcctcccgggcttcatcctctgcaccggcgag
aacctctgccacacgggccgcactttcgatgcccagattgtcatcattgaacacaagtcc
atcatctgtcctggttacggtgcagttcttcacatccacacctgcattgaagaagtgcaa
attacggccttaatctgtttggtagacaaaaagtcaggcgagaagagcaagacgcgacct
cgctttgttaagcaggaccaagtgtgcatcgcccggctgcggactgcagggactatctgc
cttgagaccttcaaagacttccctcagatgggacgcttcaccctgcgggatgaaggtaaa
accattgccattgggaaggtgctgaagctcgttgcagagaaagagtga
DBGET
integrated database retrieval system
