KEGG   Clupea harengus (Atlantic herring): 105900040
Entry
105900040         CDS       T09045                                 
Symbol
cfap43
Name
(RefSeq) cilia- and flagella-associated protein 43
  KO
K24223  cilia- and flagella-associated protein 43
Organism
char  Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:char00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:char03037]
    105900040 (cfap43)
Cilium and associated proteins [BR:char03037]
 Motile cilia and associated proteins
  Tether/Tether head (T/TH) complex
   105900040 (cfap43)
SSDB
Motif
Pfam: CC_Cfap43 Beta-prop_EML_2 Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_EML WD40_WDHD1_1st Beta-prop_IFT122_1st Beta-prop_WDR36-Utp21_1st CFAP43_N WD40 WDR55 CFAP251_N Beta-prop_WDR3_1st Beta-prop_WDR5 WD40_Prp19 Beta-prop_ACSF4 WD40_MABP1-WDR62_1st Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_VPS8
Other DBs
NCBI-GeneID: 105900040
NCBI-ProteinID: XP_031435104
UniProt: A0A6P8G6T9
LinkDB
Position
13
AA seq 1654 aa
MDALGHLEVRWVQGFTSRNVAFVDRKTACYTCGCFVVFLDVETKTRQFLHSPGRGIGAFT
TNGHLKMLAFSDQKLNPSIYVYSYPELTLQCELEGSAQLDYTALALSDTGPYLACSSSVP
DHTITIWDWEKKVPLCSHAQMKEDFPILVFNPMNWHQICAMNSSSLVVWNIERSDNLCIL
KQSVIHLPATDGSVVQTGMGPSQDANGKLSYLGPQMPTSSIAGLVGERADRFVPKLHKKP
QLSPSSVCWSAASHLYVGCREGWLLRVNAESLLVSILHRPKHRKGAHNIAALQEGSFLSM
ALHKDRLLVSGDDGFLHILQVKGNVLEVTQTVELDEPASSMCCSSPDKESVLLATNSGHF
YHYKPSESEKARKILEVLRGGFVAASPLHTEENLYCVSVRESGELQLWSMDAGLCVASIN
LHVQATTLTCCLVAQYVAVGTASGQVLFVDLSMKEHPRLVHRIQLYHTPVEHLLFEQGGN
YLIISGSDTNIFLLDPRPSKGFDVIGYIEADGPVVSLSALNIKEGDLVKVVVVCGGTRDE
QMERGVKGGKRIRLFTLPTQKISSEHPDCVDQSGRIFSGLLQVCYYEANLPLSSCALSLN
RLYAYCHPKKTIQTYQLPESMGSLDAPVSVAPDNEVEGHPLGPALLLMSPHHAWLATVGR
DGFLYLRASSNLDQYLQLQCHSSWLGGGRSLAFTSDNQALLSTGLRDGSLVCIKHRQMVK
GAASQKSQSVAYAESSALCQMAEWDPATQSATGSTSEEGVRQRSDIDVTEQDDSYCSPTS
EALSSATWLDNKLELVGKEEDQQFTEIKQNLRKSVKELRDTIQVMMRENEALPEMERLEQ
QEFNLDVMERKRLQAEGEQEVQRVRSEIEMENLAKSYLREVLKRECWDSMKVKGKAIMAF
NMPYEVKNYAMRERTQKELDELLRVENMRKIELADSKLQQEILEHMACVLTEREEDEDEK
GSEEESLAHSGSLSAQYGGTQPLLHSQFSLHIREQKINQITLLQDVIYKVKSAFNKEFDG
VYKQKEREMQRVCEKNKRITKIMAELDLKETLWEPKLSANERPERALTVDDSEIKVEKFL
SPEQRQKDEEKGKEEDKRRLEAKSDNIRERALDDMMAGVLEVKREDTLKMEISPPEFMSK
PELQWTEEERKAHKDYEKKVQELQEEQEKYRKALESEMKKLQTSIKEAAQGFDDILTKLF
ERKVKSEMVINQEELKIANLIHSILIEDEIINREKELNHKLEKMRALKQNMGEDLKKYRE
DVDVFRETYDNIVAEDKLLDRGFRKEFFDIPGHVVDQLYKLYKRRPRVHQIRTQTDMPSG
AGSGQAQTEGLSHMLKAMEELDSGEQMPDGLDPAVWERFCNSRRAKVECEHQVKTKALTM
AEMQAFLQRRTDEDENTRLEIINLIEGINSLREEKMRFRLDIMVQFLIKQGQVEVEVGDL
VADYSDSLLLHRSVVEELNGTIRTLGEQKIASMVECKDFRKGIIQQEWEHKRMRMLMEDL
NNKARDIQMLRVSQELQEYLGETDHDNRLSKQVLTLEKTIAQQETMHLKNVQNTKRLIKQ
LEKQAAVKAKKNIVLDTQLASMQITVAERRTIYDTIAMEDNQEAGADERYREILERKRLV
ELAKEQAHEVAVLRAEVERMRMKTFPALAQLKRS
NT seq 4965 nt   +upstreamnt  +downstreamnt
atggatgctttaggacatttagaagtcaggtgggtgcagggtttcaccagccggaacgtt
gcatttgtggacaggaaaacggcatgttacacctgtggatgttttgtggttttcttggac
gtcgagaccaaaacgaggcaatttctccatagccccggtcgcggaatcggggcattcaca
accaatggacatttgaaaatgttggctttttctgaccagaaactcaatccctctatttac
gtgtacagctacccagaacttactcttcagtgtgagcttgaaggctcagctcaactggac
tacacagctctggcactaagtgatactggtccttaccttgcttgttcctcatctgtacct
gatcacacaatcacgatttgggactgggagaaaaaggttccattatgcagccacgctcag
atgaaagaagacttcccaattttagtgttcaatcccatgaactggcaccaaatctgtgcc
atgaactccagctcacttgtggtttggaacattgaaagaagtgacaacctatgcatttta
aaacaaagtgtaatacacctcccagccacagatggcagtgtggtgcagacagggatgggc
ccctcacaggatgccaatgggaagctttcgtacctcggccctcagatgcccacctcttcc
attgctggtctcgtaggggagcgcgcagacagatttgtgcctaagcttcacaagaagcct
cagctaagccctagcagtgtgtgctggtcggctgcatctcatctgtatgtgggctgcagg
gagggctggctgcttagagtcaacgctgagtctctgcttgtctccatcctccacagacca
aaacacagaaagggagctcataacattgcagccttacaggagggcagtttcctaagcatg
gcgctgcacaaagatcgactacttgtgtctggagatgatgggtttctgcacattctgcag
gtaaaggggaatgtgttggaggtcacacagacagtggagctggatgagcctgcctccagc
atgtgttgctcatcgccggacaaggagagtgtgctgctggccaccaattctggtcatttt
taccactacaaaccctctgagtcggagaaggcaaggaaaatccttgaggtcttgagaggg
ggctttgtggctgcatctccactgcacacagaggagaacctatactgtgtgtctgtgaga
gagagtggggagctgcagctgtggtctatggatgctggactctgcgttgcatccatcaat
ctgcacgttcaggcgacaactctgacctgttgtctagtggcacagtatgtagccgtggga
actgcttcgggccaggtcctgtttgtggacctgtccatgaaggaacatcctcgcctggtg
caccgaatccaactctaccacacacccgtggaacacctgctgtttgagcaaggagggaac
tacctgattataagtggctcagacacaaacattttccttctggatccgaggccctccaaa
ggctttgatgtcatcggatacatagaagccgatgggccagtggtatccctttctgctctg
aacatcaaggagggggatcttgtgaaggtggtggttgtgtgtggaggaacgagggatgag
cagatggagagaggagtgaaaggggggaagagaatcaggctattcactctgcccactcag
aagatctcatcagagcaccctgactgtgtggaccaaagtggtcgtattttctctgggctg
ctgcaggtgtgctactatgaggcaaacctccccctctcctcctgtgcactcagcctcaac
aggctatatgcctactgccatccgaagaagactattcagacataccaacttccagagagc
atgggttccttagacgcccctgtgtctgtggcccccgataatgaggtggagggccacccc
ctggggcccgccctgctgctgatgtctccccaccacgcctggctggcaacagtaggccgc
gacggctttctgtacctgcgagcctcctccaacttggaccagtatttacagcttcagtgt
cactctagttggctgggtggggggcggagcctagctttcacctcagacaatcaggctctc
ctcagcactggcctcagagatggcagtctggtgtgcatcaaacacaggcagatggtgaag
ggggcggcctcccagaagagccaatcagtggcctacgccgagagctccgccctctgccag
atggctgagtgggacccggcaacgcagtctgctactgggtccaccagcgaggagggggtg
cggcagcgatcagacattgatgtgacagagcaggatgacagctactgcagtcctacctct
gaagccctctctagcgccacctggctggacaacaagctagagctggtcggtaaagaagaa
gaccagcagttcactgagataaagcagaacctgaggaagtccgttaaagaactccgagac
actattcaggtgatgatgagggaaaatgaggccctgcctgagatggagcgtctggagcag
caggagtttaatttggacgtgatggagaggaaacgactacaggcagagggagagcaggag
gtccagagggtgaggagtgagattgagatggagaacctggcaaagagctacctgcgggag
gtgctaaagagagagtgctgggactccatgaaagtcaaaggcaaagccatcatggccttc
aacatgccctatgaggtgaagaactacgccatgagggagagaactcagaaggagctggat
gagttactgcgagtggagaacatgaggaagattgaacttgcagactcgaagcttcagcag
gagattctggagcacatggcctgtgtgctgacggagcgtgaggaagacgaggatgagaaa
ggatcagaggaggagagcctggcccacagtggcagtctgagtgcccagtatggaggcacc
cagccactactacacagccagttcagcctgcacatcagagagcagaagatcaaccagatc
accctgctgcaggatgtcatctacaaggtgaagagtgccttcaataaggagtttgacggc
gtgtacaagcagaaggaacgggagatgcagcgtgtgtgtgagaagaacaaacgcatcaca
aagatcatggccgagctggacctgaaggagaccctctgggagcccaagctctctgcaaac
gagaggccagagagggctctgacagtggacgactcagagatcaaagtggagaagttcttg
agcccagagcagaggcagaaagacgaggagaagggaaaagaggaggacaagaggagactc
gaggcgaagagtgataacatcagggaacgcgctctggacgacatgatggcaggagtgcta
gaagtcaagagggaggacaccctaaagatggagatctctccgcccgagttcatgtccaag
ccagagctacagtggacagaggaggagaggaaagcccacaaggactacgagaagaaggtc
caggagctgcaggaggagcaggagaagtaccgcaaggctctagaatcagagatgaagaaa
ctgcagacatccatcaaagaggcagcacagggctttgatgacatcctcacgaaactgttt
gagaggaaggtgaaatcagaaatggtgataaaccaggaggagctgaagattgctaacctg
attcactccatactaatcgaggacgagattatcaacagagagaaggagctgaaccacaag
ctggaaaagatgagagctttaaagcaaaacatgggggaggacctgaagaagtacagggag
gatgtggatgtattcagagagacatacgacaacatcgtggcagaggacaagctgcttgac
cgtgggtttcgtaaagagttcttcgatataccaggacatgtagttgaccagctgtacaaa
ctttacaagagaaggcccagggttcaccagatccgtacgcagacggacatgcccagtgga
gcggggtcgggccaggcgcagactgagggcctgtctcatatgctgaaggccatggaggag
ctggactccggggagcagatgccggacggactggacccagccgtgtgggaacgcttctgt
aattccaggagggccaaggtggaatgtgagcaccaggtgaagacaaaggctctcaccatg
gcagagatgcaggcctttctacagaggagaaccgacgaggacgagaacactcgtctggag
atcataaacctcatcgaggggattaacagtctacgtgaggaaaagatgcgtttccgtctg
gacatcatggtgcagttcctgatcaagcagggccaggtggaggtggaggttggggacttg
gtggccgactactctgactccttgctgctgcaccgcagtgtggtggaggaactcaacggc
accattaggacgctgggagagcagaagatcgccagcatggtggagtgtaaggacttcagg
aagggcatcatccagcaggagtgggagcacaagaggatgcgtatgctgatggaggacctc
aacaacaaggcccgcgacatccagatgttacgggtgtctcaggaacttcaggagtacttg
ggtgagacagaccatgacaatagactgtccaagcaggttttgactctggagaaaactatt
gctcaacaggaaacgatgcacctgaagaatgtgcagaacacaaagcgtctgattaagcag
ctggaaaagcaggctgccgtgaaggctaagaagaacatcgttctggacacacagctggcc
agcatgcagatcactgtggccgagaggagaaccatctatgacaccatagccatggaggat
aaccaggaggccggggccgatgagcgctacagggagatcctggagcggaagcggctggtg
gagctggccaaggagcaggcccatgaggtggcggtgctgcgtgcagaggtggagaggatg
aggatgaagaccttccctgcccttgcccagctcaaacgcagctga

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