Clupea harengus (Atlantic herring): 105900096
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Entry
105900096 CDS
T09045
Name
(RefSeq) integrin alpha-6-like
KO
K06485
integrin alpha 6
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04382
Cornified envelope formation
char04510
Focal adhesion
char04512
ECM-receptor interaction
char04514
Cell adhesion molecule (CAM) interaction
char04518
Integrin signaling
char04810
Regulation of actin cytoskeleton
char04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105900096
04514 Cell adhesion molecule (CAM) interaction
105900096
04518 Integrin signaling
105900096
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
105900096
09142 Cell motility
04820 Cytoskeleton in muscle cells
105900096
04810 Regulation of actin cytoskeleton
105900096
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
105900096
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
char04147
]
105900096
04515 Cell adhesion molecules [BR:
char04515
]
105900096
04090 CD molecules [BR:
char04090
]
105900096
Exosome [BR:
char04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
105900096
Exosomal proteins of breast milk
105900096
Cell adhesion molecules [BR:
char04515
]
Integrins
Integrin alpha subunits
105900096
CD molecules [BR:
char04090
]
Proteins
105900096
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Integrin_A_Ig_3
Integrin_A_Ig_2
FG-GAP
Integrin_A_Ig_1
FG-GAP_3
DUF11
Motif
Other DBs
NCBI-GeneID:
105900096
NCBI-ProteinID:
XP_031424711
Ensembl:
ENSCHAG00000004479
UniProt:
A0A6P8FM64
LinkDB
All DBs
Position
6:complement(6125364..6139904)
Genome browser
AA seq
1049 aa
AA seq
DB search
MAPLRRRLCLLLLPPLLLVLDWCQFAGVSAFNLDTAGALRKDGDPGSLFGFSLAMHHQKH
LGDRKVLLVGAPHAKALGKQRANITGGLYSCRFTTVPSDCQRIQFDTTETEKDHKENQWM
GVSVQSQGPGGKVVVCAHRYQRWESEESRLMPGRCIILEQDLQVSKLDESSWDRKFCAEE
GRLVGGRTKERFAYCQQGVSPAFTSDKRHILFGAPGVYDWKGIVRLEPAGDRSALDAEFL
ETGDENEYNPKLVPVDISSYLGFSLGSSTALTKMGELIIVAGAPRAGHSGKVLLLKREGT
SSLSMEHTLTGPGLASSFGYDLAVVDLNADGWEDLVVGAPQYFEKDKEVGGAVYVYINRA
DGRDWSDPKIVRLHGNKDSMFGLAVESIGDVNQDGFQDLAVGAPYEGSGRVYIYHGSSEG
IQHKPTQILEGEDGVTLFGYSLAGNMDIDGNEYPDVAVGSLSDSVFVYRARPVINIRRTL
MITPDKIDIKKEKCDLRPCRMTVKSCFSYTTHPATYRPNLNISYVLEAERVVFQDASQGT
LRLQSPSKEECVSTRLRLQTNMHDKLRGIPISVSASLLSATSSHDSTHNFLPELTPVTSP
QDKQPQAELRFVNTGCGSDNICQSNLALQYQFVSRPNKGNADRLTPLRRENGTTLIPAGD
KEVGLNIKVTNKEGDDAHHSQLLATFPDSLSYVSYRSQDKSVYCIANGNGTQVECELGNP
LPRDAEVHLYITLTTERISLTTSDVNVTLQLKTISAQNISAVDARGRVIFDLDLQVFGLA
RPSQVSVGGEVKGENKMTSEEDIGSLVQYEFRINNLGRPLKSFATASLNIQWPKVNKNGK
WLLYLVQISSKGVQAVSCSPAQEVSPLKHIKAQGMARGKRQAVESELEALSTDGILSLFG
SKRKYKILACGEEVKCATIKCPLLGLDNNAVVILRSRLWNSTFLEEYKSLNYLDIVVNAS
LSLDSAPENVILRSSHTQVKLTVFPERKLSLYGRVPWWVILLSVLLALLLLALLGVLLWK
LDCCSCSICAKNKKQYHVISGWEGAHPTG
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atggcaccattgagacggagactctgcctgttgctgctgccaccactgttgctggttctg
gactggtgtcagtttgctggcgtctcagcctttaacttggacacggccggagccctgagg
aaggacggggacccagggagcctgtttggtttctctctggccatgcaccaccaaaagcac
ctgggtgacaggaaagtattactggtaggtgctcctcatgccaaagccttggggaagcag
agggccaacatcactgggggactgtatagctgcagattcacaaccgtgcccagtgactgt
caacgcatccagtttgacaccacggaaactgaaaaggaccacaaagagaaccagtggatg
ggggtgagcgttcagagccagggacctgggggaaaggtcgtggtatgtgcccaccgctac
cagagatgggagtcagaggagtctcggctgatgcccggccgctgtataatcctggagcag
gacctgcaggtatccaagctggacgagtcctcctgggaccggaagttctgtgctgaagaa
ggccgcctggttgggggcaggaccaaggagcgctttgcctactgccagcagggagtctct
cctgcattcaccagcgacaaacgccacatcctgtttggagctccaggggtctacgactgg
aagggtatcgtgcgtctggagcctgcaggtgaccggagcgcccttgatgctgagttcctg
gaaactggggatgagaacgagtacaacccaaagcttgtgcctgtcgacatcagcagttat
ttaggattctctctaggctccagcactgctctgaccaagatgggggagctgatcatcgtg
gccggggcccctagggcaggacacagtgggaaggtgctgctgcttaagcgtgagggaacg
agcagtctgagtatggagcataccctcactggacccggcctggcctcgtccttcggctac
gacctcgctgtagtagacctcaacgcagacgggtgggaggacctggtggttggagccccc
cagtactttgaaaaggataaagaagtgggaggggccgtctacgtctacatcaatcgcgcc
gacggcagagactggagcgacccaaagattgtccgtctccacggcaacaaggactccatg
ttcgggctggcagttgaaagcattggtgatgtcaatcaagacggattccaagatcttgcc
gtgggagccccgtacgagggatctgggcgagtctacatctaccacggctcttctgagggc
attcaacataaacccacgcagatcttagaaggtgaagatggtgtgacgttatttggatat
tccttggcagggaatatggacatagacgggaatgaatatccagatgtagctgtggggtct
ctctcagattctgtttttgtttacagggcacgaccagtcataaatattaggaggaccttg
atgataacccctgataaaatcgacataaaaaaggaaaaatgtgatcttcgtccctgcaga
atgactgtcaagtcctgtttttcttacaccacacatcctgccacctaccggccaaactta
aatatcagctacgtcctggaggcagagagggtcgtcttccaggatgcgtcccagggcacg
ctgaggctccagagtcccagtaaggaggagtgtgtgagcacgaggctcagactacagact
aacatgcacgataagctgaggggtatccccatcagtgtctctgcatcgctcctgagcgca
acatccagccatgattcgacacacaacttcctgcccgagctcacacctgtcacctcacca
caggacaaacaaccacaggctgagctcagatttgtgaatacaggatgcggcagcgacaac
atctgtcagagtaacctggcactccagtatcagtttgtatccaggccaaacaagggcaac
gcagaccgcttaacaccattacgaagagagaatggcaccacactgattcctgccggtgac
aaagaggttggtctgaatattaaggtgacaaacaaagaaggagacgacgcccatcacagc
cagctgctggccaccttccccgactcgctctcttacgtgtcctatcgttcccaggacaaa
tccgtgtactgtatagctaatggcaatggaacccaggtggagtgtgaattaggaaatccg
ttacccagagatgcagaggttcatctttatattacactgaccactgagaggatctccttg
acaacttcagatgtcaatgttactctgcaactgaaaacgatcagtgctcagaatatatca
gcagtggatgctaggggccgagtcatcttcgatctggacctgcaggtgtttggtcttgca
cggccatcccaggtgtcagtcggaggggaagtgaaaggggagaataaaatgacatcagag
gaagacattggtagtctggtacagtacgagttcaggatcaacaatctgggacgacctctg
aaatcattcgccacagcatcactgaacatccagtggcccaaagtgaataagaatgggaaa
tggctcctatatctggtgcagattagcagtaaaggggtccaggcggtgtcctgctctccc
gcacaggaagtcagccctctcaaacacatcaaggctcaaggtatggcgcgagggaaacgg
caggcagtggagtcagagctggaggccctgagcactgacggaatattatccctatttgga
agcaaaaggaaatacaaaatactggcttgcggtgaggaagttaaatgtgcaactataaag
tgtcccctattgggcctggataacaacgcagtggtcattctcagatctcgtttgtggaac
agcacatttcttgaggagtataagtccttgaactacctggacattgtggtgaacgcctct
cttagccttgattcagctccagaaaacgtcatcctcaggagttctcatactcaggtgaag
ctgactgtgttccctgagaggaagttgtcgctgtatggcagagtgccctggtgggtgatt
ctgctctccgtcctcctggccttgctcctgctggctctactgggcgtcctgctgtggaag
cttgactgctgcagttgctctatatgtgccaagaacaagaaacaataccatgtgatctca
ggatgggagggggctcatcccactggatag
DBGET
integrated database retrieval system