Clupea harengus (Atlantic herring): 105900112
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Entry
105900112 CDS
T09045
Symbol
slc6a1a
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 1a
KO
K05034
solute carrier family 6 (neurotransmitter transporter, GABA) member 1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
105900112 (slc6a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
char02000
]
105900112 (slc6a1a)
Transporters [BR:
char02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
105900112 (slc6a1a)
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Gene cluster
GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
105900112
NCBI-ProteinID:
XP_012682818
Ensembl:
ENSCHAG00000019029
UniProt:
A0A6P8F2I3
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Position
4:27658905..27675592
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AA seq
711 aa
AA seq
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MATNGTKASDGQVVTELNEVSTIDKPNTAEAKDEKKKSDLPEREEWVGKFDFLLSCVGYA
IGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFFLECALGQYTSIGGLGVWKLAPM
FKGVGLAAAVLSFWLNIYYVVIISWAIYYLWNSLTTELPWQNCNNPWNTERCYTNYSITE
TINLTSSVVEFWERNMHQLTDGLEKPGTIRLPLAITLAIAWVLVYFCIWKGVSWTGKVVY
FSATYPYFMLFILFCRGITLPGAMDGVLFYITPDFQKLKESEVWLDAATQIFFSYGLGLG
SLIALGSYNKFHNNVYRDSIIVCCINSFTSMFAGLVIFSIVGFMSHITKRPIADVAKSGP
GLAFLAYPEAVTQLPISPLWSILFFSMLLMLGIDSQFCTVEGFITALVDEFPLVLRKRRE
IFIACVCAVSYVIGLSNITQGGLYVFKLFDYYSASGMCLLFLVFFECISISWFYGVNNFY
ENIQEMIGYKPCLWWKLCWVVFTPLIVGGVFLFSAFQMVPLTMGDYVFPAWGQGVGWLMA
LSSMLLIPGYMVYMFLTLKGTYKERIRIMLQPPLVRRAQVNGPDQQPTDVTVTTAITNPA
SPAPAVSPTGTAATAATAATAATAAPAATAASPTTAATPTTAASPAAAASPTATSPANPS
NPTSPTNPTNPAIPATPATPASPVNPTIPATPINPISPTNPASPATAEANV
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaaatggcaccaaagcctcggatggccaagttgtgacggaattgaacgaagta
tcaactattgataagccaaatacagcggaggcaaaggacgagaagaagaaatcggatctc
cctgagagagaagaatgggtagggaaatttgatttcctattgtcgtgcgttggctatgcc
atcggattgggaaacgtctggagatttccttacctttgtggaaaaaatggtggaggggcc
ttcttgatcccttattttttaaccctgatttttgcgggagttcctttgtttttcttggaa
tgcgctcttggccaatacacgtcgattggtgggcttggagtatggaagctggctccaatg
ttcaaaggtgttggcctcgcagctgccgtgctttccttctggctaaacatatattacgtt
gtaatcatttcctgggccatatactacctgtggaactccttgacaaccgaactgccatgg
caaaattgcaataacccatggaacacggagaggtgctacacaaactacagcatcactgaa
accatcaacctcaccagttctgtggtggagttttgggaacgcaacatgcatcagctaacc
gatgggttggagaaaccaggcacgatcagactcccactggctatcacactggccatcgcc
tgggtgctcgtgtacttctgcatctggaaaggtgtcagttggactggaaaggtggtttac
ttctcggccacgtacccgtacttcatgctcttcatcctgttctgccgtggcatcaccctg
cctggagccatggatggcgtcttgttctacatcacgccagattttcagaaactcaaagag
tctgaggtgtggctagatgcagccactcagattttcttctcttatggtttgggcctgggt
tcactgatagcccttgggagttacaacaagttccataataacgtctacagggactccatc
attgtgtgttgcatcaactccttcacgagcatgtttgctggattggtcattttctccatc
gttggattcatgtctcatatcaccaagagacccatagcggatgtagctaaatcaggtccg
ggattggctttcctggcttatcctgaagctgtgacccagctgcctatttctccgctgtgg
tccattttgttcttctccatgttactcatgcttgggattgacagtcagttctgtactgtg
gagggcttcatcacggctctggtggatgagtttcccttggtgctgaggaaacggcgggag
atcttcatcgcctgtgtctgcgccgtgtcctacgtgattggcctgtccaacatcacacag
ggaggcctgtacgtgttcaagctgtttgattactactcggccagcggcatgtgcctgttg
ttcctcgtcttcttcgagtgcatctccatctcttggttctacggtgtgaacaacttctat
gagaatattcaggagatgattggctacaaaccctgcttatggtggaagctgtgctgggtg
gtcttcacacctctcatcgtcggaggcgtgttcctgttcagtgcgtttcagatggtgccc
ctgaccatgggggactacgtgttcccagcctggggtcagggggtgggctggctcatggcg
ctctcctccatgctcctcatccccggatacatggtctacatgttcctcaccctgaagggc
acctacaaggagcggatcaggatcatgctgcagccccctctggtgaggcgggcccaggtg
aacggccctgatcagcagccaactgacgtcacagttaccaccgccatcaccaaccctgcc
agcccggcacctgctgtcagccccacgggcactgctgccaccgctgccaccgctgccacc
gctgccaccgctgcccctgctgccacggctgccagccccaccaccgctgccacccccacc
accgctgccagtccagcagctgcagccagcccaaccgccaccagtcctgccaacccgagc
aatccgaccagccccaccaaccctaccaaccctgccatccctgccacccctgccacccct
gcgagccctgtcaaccctactatccctgccacccccatcaaccccatcagccccactaac
cccgccagtccggccactgcagaggccaacgtctaa
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