Clupea harengus (Atlantic herring): 105900129
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Entry
105900129 CDS
T09045
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B-like
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105900129
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105900129
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
105900129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
zf-TRAF
Prok-RING_4
Sina_ZnF
PDZ_Tricorn
TRAF3_RING
zf-rbx1
RING_XB3-XBAT31
TRAF2_zf
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
105900129
NCBI-ProteinID:
XP_031422819
UniProt:
A0A6P8FBP9
LinkDB
All DBs
Position
4:28466853..28503747
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AA seq
1080 aa
AA seq
DB search
MGFDLDRFSAVVDPDFKCNLCGKVLEDPLTTPCGHVFCASCAIPWVVQQNSCPVKCQRVS
TKELNHVLPLKNLILKLDIKCDNYARGCKRVVKLQHLAEHTEMCDFSPAKCRNKGCNEVL
NLKDMDTHMRETCEYRPVEICENGCGLMLLHKDQKTDNHCCLKALKGNNSVLQAKTGSLE
KELKRQSLRAISREKSLLAQLSAVHSELQMTALKYQRKFAEYNARLDSLSKSRTPALKDG
DTRSLKVTLHRSSGSLGFNIMGGTSCGDPEEVHLTDEILVSKVVENGPADKEDGLQVHDR
IMEVNGKDLSRSSHDQAVEAFRLARDPVEVQVLRRISSTHTPAAVTGTHTHTPAVTGRPE
REHKGVDSSTQTDAYPTPEHLSHLSHMPSSPMGPLAMTMPMLGEYLLPKECMPSCECLYS
SGYLEGIQRELEREELEYEEVDLQRMSARDKLGLTLCYRTDEDETGVYVSEIDPNSIAAQ
DGRIREGDRIIQINGVEIQTHEDAVALLASEKSRNVCLLMARPECQLEGGWLEDDRNDFL
DGLHMDMLEEQHHQAMQYTASMLQQNMHPGYAGTQDAVTILSLHHEKDSGLGRTDDSTRN
DESSEQENLAYSQDTLGSGDAHLSNESFFSADADADSLGILEDECVDFRELLELKCLVRG
GTQGYAAVPCQGAHPGVVMIDDPELELLNAELRHIELECQSIVRAHRMQRLHEQVCGAGD
SGSGGSISHAGEPWMHHGGLHRTDMRQVELRGVMDKDSSSAYNTGESCRSSSTPAPSTLE
LSSTGSPRHGGDQAAEADLTPKHKPDGRGSKHLLSPVHESSPSRSRSSGKQAKAAAGSRQ
GEVAAAPASKSSARSPSRSPYKHAYIPAHAQHYQSYMQLIQQRSAVEYGQSQASLASACR
GERDSVGGGDGLRPAELHGGGGGPKAEWKVKVRSDGTRYITKRPTRGRLLRERALRICEE
RCGVTTDDDAASELKMGRYWNKEERKQHASRAREQRQRREMLKQSRTEEAREAAAGSGGG
GVADDRREPDIIQLSHKKMTRKRNRKIFDNWMTIQELLSHGTRSPDGTRVYNSLLSVTTV
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atgggatttgatttggatcgtttcagcgctgttgtggaccctgactttaaatgcaatttg
tgtggtaaagttttagaggacccgctgacaactccgtgtgggcacgtcttctgcgccagc
tgcgcaattccctgggtcgtgcagcaaaatagttgtcccgtcaaatgtcagcgagtttct
accaaagaactaaaccatgtattgcctctcaaaaatcttatcctgaaactggacataaaa
tgcgacaactacgcaagaggctgcaagcgagtggtgaagctccaacatctggctgagcac
accgagatgtgtgacttttctccggcgaaatgcagaaataaaggctgtaacgaagtgctg
aatttgaaggatatggatactcatatgcgggaaacgtgtgagtacagaccggtggaaatt
tgtgagaatggttgtggattgatgctgctgcacaaagaccagaaaacagacaatcactgt
tgtttaaaagctctcaaagggaacaacagcgtacttcaagcgaaaacgggcagtctggag
aaggaactgaagagacaatcgctgagagccatcagcagagagaaatctttactcgctcaa
ctctctgcggtgcacagcgagcttcagatgactgctttgaaataccagaggaaatttgcc
gagtataacgcacggcttgattcactttccaagagcagaacccccgcgctcaaggacggg
gacaccaggagtctcaaggttactctgcatcgatcatctggatctctgggcttcaacatc
atgggtggcacctcctgtggggaccctgaggaggtgcatttgacggatgagattcttgtg
tcaaaggtcgtggagaatggcccagcagacaaagaggacggtctgcaggtacatgacagg
attatggaggtgaacggtaaggacctgtccaggtcctcgcatgaccaggctgtggaggcc
ttccgtctggccagagaccccgtggaggtgcaggtgctgcgacggatctccagcacacac
acaccggcagcggtgaccggcacacacacacacacaccggcggtgaccggcaggcccgag
cgcgagcacaaaggagtggacagcagcacccagacggacgcctatcccaccccggagcac
ctatcccacctatcccacatgccttcttctcccatggggcccctggctatgactatgccc
atgctgggggaatacctgctacccaaagaatgcatgcccagctgtgagtgtctgtactcc
agtggatacctggagggcattcagcgagagctggagagagaggagctcgagtatgaggag
gtggatttgcagaggatgagcgctcgggacaagctgggtctgacgctatgctaccgcacg
gacgaggatgagaccggggtttacgtcagtgagattgatccaaacagcattgcagcacaa
gatggccgcattcgagaaggtgacagaattattcagataaacggagttgagatccagact
catgaggatgcggtggctctgctggccagtgagaagagcagaaatgtgtgtctcctcatg
gctcggcccgagtgccagctggagggaggctggttggaggacgacaggaacgacttcctg
gacgggctgcacatggacatgctggaggagcagcatcaccaggccatgcagtacaccgcc
agcatgctacagcagaacatgcaccctgggtatgctgggacgcaggacgcagtcaccatc
ctgtccctccaccacgagaaggacagcggcctgggccgcacggacgacagcacccgcaac
gacgagagctccgagcaggagaacctggcctacagccaggacacgctgggcagtggagac
gcgcacctgagcaacgagtccttcttctcggccgacgccgacgccgactccctgggcatc
ctggaggacgagtgtgtagacttccgcgagctgctggagctgaagtgcctggtgcgtggc
ggcactcagggctatgccgccgtcccttgccagggtgcccaccccggcgtggtgatgatc
gacgatccagagctggagctgctgaacgccgagctgcggcacatcgagctggagtgccag
agcatcgtgcgggctcaccgcatgcagcggctgcacgagcaggtgtgcggtgcaggcgac
agcggcagcggcggcagcatcagccatgccggcgaaccctggatgcatcacggtgggctg
cacaggacggacatgcgtcaggtcgagctccggggggtgatggacaaggacagctccagc
gcgtacaacacgggcgagagctgccgcagcagcagcaccccggcccccagcaccctggag
ctgtcctccaccggctccccgaggcacggcggcgaccaggcggccgaggccgacctcacc
cccaaacacaagcccgacggcaggggctccaagcacctgctctcgcccgtccacgagtct
agcccctctaggagtcgctcgtcaggcaagcaggcgaaggccgcggcggggagcagacag
ggcgaggtggcggcagcgccggcttcgaagagctccgcgaggtcgccgtcgcgctcgccg
tacaaacacgcgtacatcccggcccacgcacagcactaccagagctacatgcagctcatc
cagcagcggtcggccgtggagtacggccagagccaggccagcctagccagcgcgtgccgc
ggggagcgcgacagcgtcggtggcggcgatggccttcgccccgcggagcttcacggtggc
ggcggaggccccaaggccgaatggaaggtgaaagtgcggagcgacggcacgcgctacatc
accaagcgaccgacgcgtggccggctgctgagggagcgcgccctgcgcatctgcgaggag
cgctgcggcgtcaccacggacgacgacgccgccagcgagctcaagatgggccgctactgg
aacaaggaggagcgcaagcagcacgccagccgggcccgcgagcagcggcagcgccgcgag
atgctcaagcagagccgcaccgaggaggcgagagaagcggccgccggctccggcggagga
ggagtagcggacgacaggagggagcctgacatcattcagctcagccacaagaagatgacg
aggaagaggaaccggaagatcttcgacaactggatgaccatccaggagctcctgtcgcac
ggcacgcgctccccggacggcacgcgtgtgtacaactcgctcctctccgtcaccaccgta
tag
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