Clupea harengus (Atlantic herring): 105900134
Help
Entry
105900134 CDS
T09045
Symbol
si:dkey-72l14.3
Name
(RefSeq) glyco_hydro_56 domain-containing protein
KO
K01197
hyaluronoglucosaminidase [EC:
3.2.1.35
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char00531
Glycosaminoglycan degradation
char01100
Metabolic pathways
char04142
Lysosome
Module
char_M00076
Dermatan sulfate degradation
char_M00077
Chondroitin sulfate degradation
Brite
KEGG Orthology (KO) [BR:
char00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00531 Glycosaminoglycan degradation
105900134 (si:dkey-72l14.3)
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
105900134 (si:dkey-72l14.3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02042 Bacterial toxins [BR:
char02042
]
105900134 (si:dkey-72l14.3)
00536 Glycosaminoglycan binding proteins [BR:
char00536
]
105900134 (si:dkey-72l14.3)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
char00537
]
105900134 (si:dkey-72l14.3)
Enzymes [BR:
char01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.35 hyaluronoglucosaminidase
105900134 (si:dkey-72l14.3)
Bacterial toxins [BR:
char02042
]
Toxins that damage the extracellular matrix
Hyaluronidases/Collagenases
105900134 (si:dkey-72l14.3)
Glycosaminoglycan binding proteins [BR:
char00536
]
Heparan sulfate / Heparin
Enzymes
105900134 (si:dkey-72l14.3)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
char00537
]
Enzymes
105900134 (si:dkey-72l14.3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_56
Motif
Other DBs
NCBI-GeneID:
105900134
NCBI-ProteinID:
XP_031421464
Ensembl:
ENSCHAG00000000922
UniProt:
A0A6P8F8C7
LinkDB
All DBs
Position
4:complement(28636563..28643374)
Genome browser
AA seq
512 aa
AA seq
DB search
MAWRGRPIGWTPLCASLLLRLTLLLYPALGGPARSPLLPGQPFLVFWGVPDRGCPGRPDP
AAFGMEWQGRVAVFYEDTLGLYPFFTSLDQPVDGGLPQHTSLNTHLQRVEADLLAALPQA
GAPGLGVLRWKEWSPQWSRNRGKQGKYQEGSRALLRGFFPDWSPEEVEKWAQVDFEAAAQ
AILMETLREVRRLRPQSLWGVAPFPNCYNSGPIQLLSNYTGRCPAAEMALNDELMWLWKR
STAIFPTLTMDRFPPGSKGPWLYSSNQIREALRVAALAGTAYDLPVFPLVRTVYASTNAY
LSEADLVNTVGESAAMGAAGVIMWERSFLAKTQKSCSELASFIREVLGPYAVNVTTAARL
CGVSLCQGRGRCVRKNQEDPVYLHLPSTNFRLLPEGGDGVRAAGELDPAFLDTWRRDFRC
QFYEALEGAAADQESGGTDTRGANMPRTRKPPTLTGQGQGQGQGQGQGQGQGQSEGTGVT
VGQVPKDSSTSTRQLTAHLVFLLTATGLLLIC
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atggcgtggagagggcgccccatcggctggaccccactctgtgcctctcttctcctccgt
ctgaccctcctgctctaccctgctctcggcggtccagcccgctcgcccctcctccccggc
cagcctttcctggtgttttggggggttcccgacaggggctgccctgggcgccccgaccca
gcggccttcggcatggagtggcagggccgcgtggccgtcttctacgaggacaccctgggc
ctgtaccccttcttcaccagcctggaccagcccgtcgacggaggccttccgcagcacacc
agcctgaacacccacctccagagggtggaggccgacctgctggccgccctgccccaggcc
ggggctccgggtctgggggtgctacggtggaaggagtggtcgccccagtggagcaggaac
aggggaaagcaggggaagtaccaggaggggtcacgggcgctgctcagggggttcttcccc
gactggagtccggaggaggtagagaagtgggcacaggtggactttgaggccgctgctcag
gccatcctcatggaaaccctgagggaggtgaggaggctccgcccccagagcctatgggga
gtggctccctttccaaactgctacaactccggccccattcagctcctgtccaattacaca
ggccgctgtcctgccgccgagatggcccttaatgatgaactcatgtggctatggaaacga
agcacggccatcttccctacactgacgatggacaggttcccacctgggtccaaggggccc
tggctttattcctccaatcagattcgagaggccctgagagtggcagctttggctggaact
gcctatgaccttcctgtgtttccattggtcagaacggtctatgcatcgaccaatgcctat
ctgtctgaggctgatctggtgaacacagtgggagagagtgctgccatgggtgcagctgga
gtcattatgtgggagagatccttcctagcaaagactcagaagtcctgctccgagctggcc
tctttcatacgggaagtgttgggcccgtacgcggtgaacgtcaccaccgcggcgcgtctg
tgtggcgtgtccctgtgccagggtcgcgggcgctgcgtgcggaagaaccaagaagacccc
gtctaccttcacctgccttccaccaacttccgcctcctaccagaggggggcgacggtgtc
cgggcggcgggagaactcgaccccgccttcctggacacctggaggcgggacttccgctgt
cagttttacgaggccctggagggagccgccgccgatcaggagtccggcgggacggacacc
cgaggggccaacatgccccgcacgcgcaagcccccgactctgacaggacaggggcagggg
caggggcagggacaggggcaggggcagggacaggggcagagtgaggggacaggcgtaaca
gttggacaagtgcccaaggacagcagcacctcaacccgccagctcacggcccacctggtc
ttcctgctgacggcgacgggcctcctcctaatctgctga
DBGET
integrated database retrieval system
