Clupea harengus (Atlantic herring): 105900157
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Entry
105900157 CDS
T09045
Name
(RefSeq) peroxisome proliferator-activated receptor gamma-like
KO
K08530
peroxisome proliferator-activated receptor gamma
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03320
PPAR signaling pathway
char04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
105900157
09150 Organismal Systems
09152 Endocrine system
03320 PPAR signaling pathway
105900157
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105900157
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
char03310
]
105900157
Transcription factors [BR:
char03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
105900157
Nuclear receptors [BR:
char03310
]
1. Thyroid hormone like
1C. Peroxisome proliferator-activated receptor (PPAR)
105900157
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
PPARgamma_N
Motif
Other DBs
NCBI-GeneID:
105900157
NCBI-ProteinID:
XP_012682864
Ensembl:
ENSCHAG00000019273
UniProt:
A0A6P3VW74
LinkDB
All DBs
Position
4:27719170..27729977
Genome browser
AA seq
486 aa
AA seq
DB search
MVDAQMLTWPMSFGRSPMERDGQSDICHVFDMSTFNYPSPLSEENSISPKHLEDFTATEE
HHEWTPGEGTFTMLSEASIKVEPRSPSELSEPNYSYFKLHTDVSSALVNLECRVCGDRAS
GYHYGVHACEGCKGFFRRTVRLNLIYDYCALQCRIHKKSRNKCQYCRFQKCLLVGMSHNA
IRFGRMPRTDREKLLGEISKEIEQLDRQAADRRALAKQLYESYVKHFPLPKSKAKAILSG
KTNNHAPFVIHDMKSLMAGQQFLNCKEVPLLKPELDVALEALEGGVELSFFRQVQVRSAE
SIREITEFAKSIPGFVDLDLNDQITLLKYGAMEVMIILWAPLMNKDGTLIAYGQIFMTRE
FLRSLREPFCGILEPKFDFATKFNVLDLDDSDLALFIAVIILCGDRPGLVNVKPVEELQE
TVLQALETHLKTVHPEQPQLFAKVLQKMADLRPLVADHVRQIHLLKKTELDMCLHPLLGE
IMRDLY
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atggtggacgctcagatgctcacctggcctatgagtttcggacgcagccccatggagcgg
gacgggcaatcggacatctgccacgtgtttgacatgtccacctttaactaccccagccct
ctcagcgaagagaacagcatcagccctaagcacttggaggatttcaccgccacagaggaa
caccacgaatggacacctggagaggggacgttcaccatgctgagcgaggcctccataaag
gtcgaacccaggtccccatcagaactctctgaaccaaactactcttatttcaagctgcac
acggatgtctcttctgcgttggtgaacctggagtgtagggtgtgtggagacagggcttcg
ggctaccactatggggttcatgcatgtgagggctgcaagggtttcttcagaaggacagtt
cgactgaacttgatatatgactactgtgccttgcagtgtcgcattcacaagaagagtcga
aacaagtgtcaatattgccgttttcagaagtgtcttttggtgggcatgtcccacaacgct
attcgcttcggtcgaatgccccggactgacagggagaaacttttgggcgaaatttccaag
gaaattgaacagctagacagacaagcagctgataggagggcgcttgccaagcaactgtat
gaatcctatgtcaaacacttccccttgcccaagagcaaggcaaaggcaatcctgtcagga
aagaccaacaaccatgcgccttttgtcatccacgacatgaaatctcttatggctgggcag
cagtttctgaactgcaaagaggtgcccctgctgaagcctgaactggacgtggctctggag
gccctcgagggtggagtggagctgtcgttcttccgtcaggtgcaggtccgctccgccgag
agcatccgggagatcaccgagttcgccaagagcatcccgggattcgtggacctggacctg
aatgaccagatcacgctgctgaagtacggcgccatggaggtgatgatcatcctgtgggcc
ccgctcatgaacaaagacggcacgctgatcgcctacggacagatcttcatgacgcgggag
ttcctacgcagtctgcgggagccgttctgtggcattctggagcccaagttcgactttgcc
accaagtttaacgtgctggatctggatgacagcgacctagctctcttcatcgcagtcatc
attctctgtggagaccggccaggcctggtgaacgtgaagcccgtggaggagctccaggag
acggtgctgcaggcgctggagacccacctgaagacggtgcatccggagcagccccagctc
ttcgccaaagtgctgcagaagatggccgacctgcggccgctggtggctgaccacgtccgc
caaatccaccttctgaagaaaacggagctggacatgtgtctgcaccctctgttaggggaa
atcatgagagacctgtactag
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