Clupea harengus (Atlantic herring): 105900160
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Entry
105900160 CDS
T09045
Name
(RefSeq) serine/arginine-rich splicing factor 6-like
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03040
Spliceosome
char05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105900160
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
105900160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
char03041
]
105900160
Spliceosome [BR:
char03041
]
Common components
Common spliceosomal components
SR proteins
105900160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_5
Motif
Other DBs
NCBI-GeneID:
105900160
NCBI-ProteinID:
XP_012682868
UniProt:
A0A6P3VXE2
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All DBs
Position
4:complement(27971670..27976473)
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AA seq
445 aa
AA seq
DB search
MPRVYIGRLSYHVREKDIQRFFSGYGKLMEVDMKNGYGFVEFDDNRDADDAVYELNGKEL
CGERVVVEHARGPRRDRDSYGGGGGGGGYGGSDRGGGGDRGSGGGRSSGYSSRGRDTSRT
GRDKYGPPVRTEYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSQS
DMRRAIDKLDGTDINGRKIRLVEDKARRRRSYSGSRSRSRSHRRSRSRSRRSSHSRSRSK
SRSRSHSRRRRSRSQSGRKSRSRSGRKSRSRSGRKSRSRSGRKSRSRSGRKSRSRSGRKS
RSKSPTRKSSSGPRKSRSRSRTRKSRSRSAGGKSRSRSDNRKSRSKSRSKVKSERDSRSR
SNEKPAAKKSRSRSASPIKNGKEDDAKSASRSPSPAAEKSKSKSPARRSASRSKSRSPVC
SKSPSPSRSRSHSRSRSRSRSASQD
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgggtctacattggacgtttaagttatcatgtccgtgaaaaggacattcagagg
tttttcagtgggtatggaaagctcatggaagtcgatatgaaaaatgggtatggctttgtt
gagttcgatgataatcgcgatgcagacgacgctgtgtatgaactcaatggcaaggagcta
tgtggagagcgtgttgttgttgaacatgctcggggacctcgccgtgaccgcgattcatac
ggtggtggtggtggcggcgggggttatgggggcagcgaccgtggcggtggcggcgaccgt
ggctccggtggaggtcgcagtagtggttacagtagcagaggcagggatacaagtcgcact
ggcagggataagtacgggccgcccgtccgtacggagtacaggctcattgtagaaaacctg
tcaagccgctgcagttggcaagacctcaaagacttcatgcgacaggcaggagaggtcacc
tatgctgatgcgcataaggaacgcaccaacgaaggggtcatcgagttccgttctcagtcc
gacatgagacgagcgattgacaaactcgatggcactgacatcaacgggaggaaaatccgt
ctggtcgaggacaaagcccgtcgtcggcgctcctactcaggcagtcgctctaggtcccgc
agccatcgtcgctctcgtagcaggagccgcaggagcagccactccaggagcagatccaaa
tcccgctccaggtcccactccaggaggagacgttcccgctctcaatctggccgcaaatct
cgctctcgatcagggcgcaaatcacgctctcgatcagggcgcaaatcacgctctcgatca
gggcgcaaatcgcgctctcgatctggccgcaaatcgcgctctagatcaggacgcaagtcc
cgctccaagtctcccacacggaaatccagctcgggccccaggaagtctcgctccaggtcc
cgcacccgcaaatcccgtagccgctcagctggcggcaagtcccgatctcgctccgacaac
aggaagtcccgatccaagagccgctccaaggtgaagtccgagagggactctcgcagtcgc
tccaacgagaagcctgctgccaagaagtcccgcagccgatcagcatcccctattaaaaac
ggaaaggaagacgacgccaagtcggcttcgaggtctccgtcccctgctgctgaaaagagc
aagtcgaagtctcctgctcggcgatcagcttcccgttctaagtcccgatcccccgtttgc
tcgaagtctccttccccctctcgctcccgttctcactctcgttcccgctcccgttccaga
tctgcatcccaagattag
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