Clupea harengus (Atlantic herring): 105900188
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Entry
105900188 CDS
T09045
Name
(RefSeq) E3 ubiquitin-protein ligase SMURF2 isoform X1
KO
K04678
E3 ubiquitin ligase SMURF1/2 [EC:
2.3.2.26
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04120
Ubiquitin mediated proteolysis
char04137
Mitophagy - animal
char04144
Endocytosis
char04340
Hedgehog signaling pathway
char04350
TGF-beta signaling pathway
char04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
105900188
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
105900188
04350 TGF-beta signaling pathway
105900188
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
105900188
04137 Mitophagy - animal
105900188
09144 Cellular community - eukaryotes
04520 Adherens junction
105900188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105900188
04121 Ubiquitin system [BR:
char04121
]
105900188
03029 Mitochondrial biogenesis [BR:
char03029
]
105900188
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
105900188
Membrane trafficking [BR:
char04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
105900188
Autophagy
Mitophagy
Other mitophagy associated proteins
105900188
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
HECT type E3
105900188
Mitochondrial biogenesis [BR:
char03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
105900188
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
C2
PRIMA1
TFIIA
Motif
Other DBs
NCBI-GeneID:
105900188
NCBI-ProteinID:
XP_031419394
Ensembl:
ENSCHAG00000019736
UniProt:
A0A6P8F3J1
LinkDB
All DBs
Position
26:complement(6345174..6408100)
Genome browser
AA seq
798 aa
AA seq
DB search
MSNQGVRRNGPVKLRLTVLCAKNLSKKDFFRLPDPFAKVVVDGSGQCHSTDTVRNTLDPK
WNQHYDLYIGKSDSITISVWNHKKIHKKQGAGFLGCVRLLSNAINRLKDTGCMSTHHRLD
LNKLGPNDNETVRGQIVVSLQSRDRIGSGGPVVDCSRLFDNDLPDGWEERRTVSGRIQYL
NHITRTTQWERPTRPASEYSSPGRPLSCLVDENTPILDSNGVGAVSSGQQCDPRAQERRV
RSQRHRNYMSRTHLHSTPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNVNC
EELGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLSANLHLVLNSPSPNGSRVGIESQ
NSNLSSRQNQLKEQQQQQQQQQQPPPQPPPQQPPPPPQQVLSPAVLQEDPDCLTVPKYKR
DLVQKLKILRTELSAQQPQAGHCRIEVSREEIFEESYRQVMKMRPKDLWKRLMVKFRGEE
GLDYGGVAREWLYLLSHEMLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIM
GMAVFHGHYIDGGFTLPFYKQLLGKPITLDDMESVDPDLHKSLVWILDNDITGVLDHTFC
VEHNAYGEIIQHELKPNGKSVPVSEDTKKEYVRLYVSWRFLHGIEAQFLALQKGFNEVIP
QHLLKAFDEKELELIVCGLGKIDIHDWKSHTRLKHCTTESNCVKWFWNAVESFDEERRAR
LLQFVTGSSRVPLQGFKALQGAAGPRQFTIHQIDANTNNLPKAHTCFNRIDIPQYEHYDK
LYDKLLTAIEETCGFAVE
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgtctaatcaaggggtgaggagaaatggcccggtgaaactgcggttgacagtcctttgt
gcgaagaacttgtcaaagaaggacttcttccgcctacctgacccattcgccaaagtcgtc
gttgacggatccgggcaatgccactcaacggacacagttaggaacacactggaccccaag
tggaatcaacattatgacctgtacatcggtaaatcggactccatcaccatcagtgtgtgg
aaccacaagaagatccataagaagcagggggccgggttcctgggctgtgtgcgcctcctg
tccaacgccatcaaccgcctcaaagacactggctgtatgtctactcatcacagactcgac
ctcaacaagctgggccccaacgacaatgaaactgtgaggggacagattgtggtgagcctg
cagtcacgtgaccgcatcggcagcggaggccccgtggtggactgcagccggctgttcgac
aacgacttacctgacggctgggaggagaggagaaccgtgtctggccggatccagtacctc
aaccacatcacgcgcaccactcagtgggagagaccaaccaggcctgcctctgaatactcc
agccctggccggcccctgagctgcctggtagatgagaacacgcccatcctggactcgaac
ggtgtcggcgcggtgtcgagcggccagcagtgcgacccgcgcgcgcaggagcgccgcgtc
cgctcccagaggcaccgcaactacatgagccgcacccacctgcactccacccccgacctg
cccgagggatacgagcagaggaccacgcagcagggccaggtctacttcctccacacgcag
accggcgtcagcacgtggcacgaccccagagtacccagggacctgagcaatgtgaactgt
gaggagcttggccctctgcctccaggctgggagattcgtaacaccgccacgggccgcgtc
tacttcgtggaccacaacaaccgcaccacgcagttcaccgacccgcgcctctctgccaat
ctccacctggtcctcaacagtccaagtcccaatggttcacgtgttgggatcgagagccag
aactctaacctcagcagtcgtcagaaccagctgaaggagcaacaacagcagcagcagcag
caacaacagccgccgccgcagccgcctccacagcagccaccgcccccaccgcagcaggtg
ctgtcaccggcggtgctgcaggaggaccccgactgcctgacggtgcccaagtacaagcgg
gacctcgtgcagaagctcaagatcctgcgcacggagctctcggcgcagcagccacaggcc
ggacactgccgcatcgaggtgtcccgcgaggagatctttgaggagtcataccggcaggtg
atgaagatgaggccgaaggacctgtggaagagactgatggtgaagttccgtggagaggag
ggccttgactacggcggggttgccagggagtggttgtatcttttatctcatgagatgctg
aacccatactacggcctcttccagtactccagagatgacatttacacactgcagatcaac
cctgactcagctgtcaatccggagcacctgtcgtatttccacttcgtgggccggatcatg
ggcatggcggtgttccacggccactacatcgacggcggcttcacgctgcccttctacaag
cagctgctgggcaagcccatcaccctggacgacatggagtccgtggaccccgacctgcac
aagagtctcgtctggatcctggacaatgacatcacgggcgtgctggaccacaccttctgc
gtggagcacaacgcctacggtgagatcatccagcacgagctcaagcccaacggcaagagc
gtgcccgtcagcgaggacaccaagaaggagtacgtcaggctgtacgtcagctggaggttc
ctgcacggcattgaggctcagttcctggccttacagaagggcttcaacgaggtcatccca
cagcacctgctcaaggcctttgatgagaaagagctggagctgattgtgtgtggcctgggg
aagatcgacatccacgactggaagtctcacacgcggctcaagcactgcacgaccgagagc
aactgtgtgaagtggttctggaacgccgtggagtccttcgacgaggagcgacgcgcgcga
ctgctgcagttcgtcaccggctcctccagagttcccctgcagggcttcaaggcgctacaa
ggggctgcaggaccgaggcagttcaccatccatcagattgatgcgaacaccaacaacctg
cccaaggcccacacctgctttaaccggattgacattccccagtacgagcactatgacaag
ctatacgacaagctgctgacagccatcgaggagacgtgcggcttcgccgtggagtga
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integrated database retrieval system
