Clupea harengus (Atlantic herring): 105900220 Help Entry 105900220         CDS       T09045                                  Symbol col2a1b Name (RefSeq) collagen, type II, alpha 1b   KO K19719   collagen type II alpha Organism char  Clupea harengus (Atlantic herring) Pathway char04510   Focal adhesion char04512   ECM-receptor interaction char04518   Integrin signaling Brite KEGG Orthology (KO) [BR:char00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     105900220 (col2a1b)    04518 Integrin signaling     105900220 (col2a1b)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     105900220 (col2a1b)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:char00536]     105900220 (col2a1b) Glycosaminoglycan binding proteins [BR:char00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    105900220 (col2a1b) SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI VWC VWC2L_2nd Motif Other DBs NCBI-GeneID:  105900220 NCBI-ProteinID:  XP_012682937 UniProt:  A0A6P3VWN9 LinkDB All DBs Position 5:2214806..2255202 Genome browser AA seq 1491 aa AA seqDB search MFSFADSRTLLLLVATQVVLLAVVRCQEEDDQEDPGSCLQDGNRYNDKDVWKPEPCRICV CDTGTVLCDDIICEEPKECPNPEIPFGECCPICPEQPPVVNGVPGAKGQKGEPGDITDVV GPKGPSGPMGPPGEQGSRGDRGDAGEKGSLGPRGRDGEPGIPGNPGPPGPPGPNGQPGLG GNFAAQMAGGFDEKSGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEGGEPGSA GPLGPRGPPGPSGKPGDDGEAGKPGKGGDRGPSGPQGARGFPGTPGLPGIKGHRGYPGLD GSKGETGSAGSKGESGSSGENGAPGPMGPRGLPGERGRPGPSGNAGARGNDGLNGPAGPP GPVGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGAGGNPGTDGIP GSKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEFGRA GPQGPLGPAGEEGKRGPRGEPGAAGPLGPNGERGSPGNRGFPGQDGLAGPKGAPGERGPA GVSGPKGAGGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPAGAAGEDGRPGPPGPQGAR GQPGVMGFPGPKGATGEPGKSGEKGSLGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEH GQPGPSGFQGLPGPPGPPGEGGKPGDGGVPGEAGPGGATGPRGERGFPGERGSAGPQGLQ GPRGLPGTPGTDGPKGAIGPGGASGAQGPPGLQGMPGERGPGGISGPKGDRGDNGEKGPE GASGKDGGRGLTGPIGPPGPGGPNGEKGESGPAGPHGAAGARGAPGDRGETGPPGPAGFA GPPGSDGQPGIKGDQGESGQKGDAGAPGPQGPSGAPGPQGPTGVSGPKGARGAQGPPGAT GFPGSAGRVGPPGPNGNPGPSGPAGPPGKDGPKGVRGDGGPSGRQGDAGLRGPAGTSGEK GEPGEDGPPGPDGPSGPQGLAGNRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGPGDR GPPGPVGPPGLTGPAGEHGREGNPGSDGPPGRDGATGIKGDRGNTGPVGAPGAPGATGAG GPVGPTGKQGDRGEAGPQGPAGPSGPAGARGMAGPQGPRGDKGEAGEGGERGQKGHRGFT GLQGLPGPPGQAGDQGATGPAGPAGSRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGET GPSGPPGNSGPPGPPGPPGPGIDMSAFAGLGQPEKGPDPMRYMRADQAAGGLRQHDAEVD ATLKSLNSQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVFCN METGESCVHPKPSSIPRKNWWSSKGNDRKHVWFGETINGGFHFSYGDDSLAANTASIQMT FLRLLSTEAAQNLTYHCKNSVAYMDSATGNLKKAVLLQGSNDVEIRAEGNSRFTYSVLED GCTKHTGQWGKTVIEYRSQKTSRLPIVDIAPMDIGGPNQEFGVDVGAVCFL NT seq 4476 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgcggattccaggactttattgctacttgtagcaacacaagtcgtgcta ttagccgtggtcagatgtcaagaggaggatgaccaggaggaccctggcagctgcctccag gacggcaatcgctataatgacaaggatgtgtggaagccggagccgtgccgcatctgcgta tgcgacacgggcacggtcctgtgcgacgacattatctgcgaggagcccaaagaatgcccc aaccctgagatcccatttggagagtgttgccccatctgccccgagcagcctcctgtcgtg aatggggtaccaggtgcaaagggacagaagggtgaaccaggagatatcacagatgtcgta ggaccaaaaggaccatcgggacccatgggacccccaggagaacagggctcacgtggagac aggggagatgccggagagaagggatctcttggcccccgtggtagagatggcgagcctggt atccctggtaatcctggccccccaggaccacccggaccaaatggacaacctggccttggt ggaaactttgctgctcagatggctggcggttttgatgagaaatctggcggtgcccagatg ggagtgatgcagggacctatgggcccaatgggacctcgaggaccacctggacccagtgga gctcctggaccacaaggttttcaaggcaaccccggagagggtggagagcccggttcagct ggcccattgggtccccgtggcccacctggaccatctggcaaacccggagatgacggtgag gctggcaaacctggtaaaggtggtgatcgtggacctagtggacctcagggagctcgtgga ttcccaggaactcctggacttcccggaatcaaaggacacagaggttatccaggtcttgat ggttctaagggagagaccggatctgctggatccaagggtgagtctggctcttctggagag aatggcgcacctggacccatgggccctcgtggtctccccggtgagagaggtcgtcccgga ccctctggaaatgctggtgctcgcggtaatgacggtttgaacggccctgctggtcctcct ggtcccgtcggtccctctggagcccctggcttccctggttccccaggttctaagggtgag gctggtcccactggcgcccgtggacctgagggagctcagggtccccgtggagagtctgga acccctggttctcctggtccttctggagctggcggcaaccctggaactgatggaatccct gggtccaaaggctctgctggcgctcctggtattgctggagctcctggtttccctggaccc cgtggacctcctggacctcagggagccactggacctcttggaccaaagggaacatctggt gaccccggtatcccaggcttcaagggtgaggctggacccaaaggagagtttggtcgcgct ggaccccaaggacctcttggccctgctggagaggaaggaaagagaggcccccgtggagag cctggtgccgctggacccctcggacctaacggagagagaggctctcccggtaaccgtggt ttccctggtcaagatggtctagctggtcccaagggtgcccctggtgagagaggacccgca ggagtgtccggacccaagggtgcaggtggtgatcccggtcgccccggagagcctggtctt cctggtgccagaggtctcaccggtcgccctggtgatgctggtcctcagggaaaagttggc cccgctggtgctgctggtgaggatggacgccccggacccccaggtccccagggagcccgt ggccagcctggtgtgatgggattccctggccccaagggtgccactggtgagcccggaaag tctggagagaaaggatctcttggtgcccctggcctgagaggtcttcctggtaaagatgga gagacaggtgctgctggaccccctggccctgctgggcccgctggagagagaggagagcat ggacagcccggaccctctggcttccagggactgcctggacctcctggcccccctggtgag ggtggcaaacctggtgatggcggtgttcctggagaggctggccctggcggtgctacagga cccagaggcgagcgtggtttcccaggagagagaggcagcgctgggcctcagggtcttcag ggaccccgtggtctccccggaactccaggaactgatggacccaagggtgctattgggcca ggtggcgcttctggtgcccagggaccccccggcctgcagggtatgcccggagagagagga cccggtggcatctcaggacccaagggagacagaggcgacaatggtgagaaaggacctgag ggtgcttctggcaaagatggtggaagaggtttgactggacccatcggtcctcctggccct ggcggtcctaatggcgagaagggagaatccggccccgctggacctcatggagctgctggt gcccgtggtgctcctggtgacaggggtgagactggtcccccaggtcccgctggatttgct ggtcctcctggttctgatggtcagcccggtatcaagggagatcagggtgagtctggacag aagggtgatgctggtgctcctggcccacagggaccctctggagctcctggacctcaggga cccactggtgtgtctggacctaaaggtgctcgtggtgcccagggacccccaggtgccact ggtttccctggatccgccggaagagtcggacccccaggccccaatggtaaccctggtcct tctggccctgctggtcctcccggtaaagacggtcctaagggtgtgcgtggtgacggtggt ccctcaggccgacagggagacgctgggctgcgcggacctgctggaacctctggagagaaa ggagagcctggagaggatggtccccctggtcccgatggtccctctgggcctcaaggtctg gctggcaaccgtggtattgtgggtcttcccggacagcgtggtgagagaggcttccctggc ctgcctggaccatctggtgagcctggaaagcagggagctcctggtggccccggagaccgt ggaccccctggcccagttggtccccctggtctgacaggccctgctggggagcatggtaga gagggcaaccctggatctgatggtcctcctggtagagatggtgctactggaatcaagggt gaccgtggtaacaccggtcctgttggcgctcctggtgccccaggtgccactggtgccggc ggccccgtcggccccactggcaaacagggagacagaggagaggccggtccccaaggacct gctggaccttccggacctgctggagccagaggcatggctggaccccaaggacctcgcgga gacaagggagaggccggcgagggtggagagagaggacagaagggacacagaggcttcacc ggtcttcagggtctgcctggacctcctggtcaggctggtgaccagggtgctactggacct gctggccctgctggttcaagaggaccccctggcccagttggaccttctggaaaggacggt tccaatggaatgcccggccctatcggaccccctggacctcgtggacgttctggcgagact ggtccctctggtcctcctggtaactctggaccccctggtcctcctggtcctcccggccct ggcatcgacatgtccgctttcgccggcctgggtcagcccgagaagggtcccgatcccatg aggtacatgcgggccgaccaggctgccggaggcctgcgccaacacgacgccgaggtggac gccaccctcaagtccctcaacagccagatcgagaacatccgcagccccgagggctccaag aagaaccctgcccgcacctgcagagacctcaagctgtgccaccccgactggaagagcggc gagtactggattgaccctaaccagggctgcaccgtcgatgccatcaaggtgttctgcaac atggagactggcgagagttgcgtgcatcccaagccttccagcatcccacgcaagaactgg tggtccagcaagggcaacgaccgcaagcacgtctggttcggcgagaccattaatggcggt ttccatttcagctatggcgatgacagtctggctgccaacactgccagcatccagatgacc ttcctcagactgctgtccacagaggccgcccagaacctcacctaccactgcaagaatagt gtggcctacatggactcagccacgggcaacctgaagaaggctgtgctgctgcagggctcc aacgatgtggagatccgcgccgagggcaacagccgcttcacatacagcgtgctggaggat ggctgcacgaaacacacaggacaatggggcaagacagtcatcgagtacagatcgcagaag acctctcgcctgcccatcgtggacatcgcccccatggacatcggtggacccaaccaggag tttggcgttgatgttggtgctgtatgcttcttgtaa

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