Clupea harengus (Atlantic herring): 105900300
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Entry
105900300 CDS
T09045
Symbol
ldb3a
Name
(RefSeq) LOW QUALITY PROTEIN: LIM domain-binding protein 3a
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
105900300 (ldb3a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
char04990
]
105900300 (ldb3a)
Domain-containing proteins not elsewhere classified [BR:
char04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
105900300 (ldb3a)
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Motif
Pfam:
LIM
PDZ
PDZ_6
DUF4749
LIM_FHL2-3_N
zf-Vps39_C
PDZ_2
Motif
Other DBs
NCBI-GeneID:
105900300
NCBI-ProteinID:
XP_031434793
UniProt:
A0A6P8G506
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Position
13:complement(25992110..26047619)
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AA seq
573 aa
AA seq
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MSTYTITLNGPAPWGFRLQGGKDFNMPLTISRITPGSKASSGNLTQGDIIVAIDGVSTDG
MTHLEAQNKIKCALNLALTMTRSKRPCSVLGSRIESSAMPAGIPHQQGQINGSPMPPNAP
AGAIDTSGEANLTPTKGTSPGPTQRTQYNSPIGLYSEETLREIAMVQESQKAKGSGTGFL
LGYSLQSASGYSSHISTSMSSQYMSGPPMQPPQMQLPPMQQQPPHMQQPPHMQPPHMQQQ
PMQPPHMQQPPHMQQPPMQQSSIQIPVGPPPQQPKMVSTATIVPSAYPTTPAPAPAPAPA
PPPAPAAPASXANRPPWVTDDNFAQKFDPGKTTSTSTKVQPLPQSAPPPPAYIPNPGPAP
GPACAPSPYIPTPLPPVARGVAQRAERVAAGSRTPMCGACNQIIRGPFLVALGRSWHPEE
FNCHYCNNSLADNSFVEEQNSVYCENCYGEYFAPSCARCNTKIMGEVMHALRQTWHTTCF
VCAACGKPFGNSLFHMEDGEPYCEKDYISLFSTKCHGCDFPVEAGDKFIEALGHTWHDTC
FVCAVCNVNLEGQPFYSKKDKPLCKKHAHAINV
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgagcacctacactatcaccctcaatgggccggcaccttggggatttcgcctgcaggga
gggaaggacttcaacatgcccctgaccatctccaggatcacacctgggagcaaggcttcg
tcaggcaacctgacccagggcgacatcatcgtggccatcgatggggtcagcacggacgga
atgactcacctggaggcccagaacaagatcaagtgtgcccttaacctggccctcactatg
accaggtccaagcgcccgtgttcagttctgggctcgaggatcgaatcctcagccatgccc
gcaggcatccctcaccagcaggggcaaataaatggcagtcccatgccccctaatgcccca
gccggtgccatagacacttccggtgaggcgaacttgacgcccaccaaggggacgtctccg
ggcccgacccagaggacgcagtacaactctcccatcggcctctactccgaggagaccttg
agagagatcgccatggtgcaggagagccagaaggctaagggctccggcacgggcttttta
ctgggctacagcctgcagtctgcctctggttacagctcccacatctcaacctccatgtcc
agccagtacatgtcgggtccaccaatgcagccaccacagatgcagctaccccctatgcaa
cagcagccaccacacatgcagcagccaccacacatgcagccaccacacatgcagcagcag
cccatgcagccaccacacatgcagcagccaccacacatgcagcagccgcccatgcagcaa
agctccattcagattcctgtgggccccccacctcagcagcccaaaatggtcagcactgct
accatcgtgcctagcgcctaccccaccactccagctcctgccccagctcctgctcctgcc
cctcccccggcccccgctgcccccgcctccnccgccaaccgcccgccctgggtgacggac
gacaacttcgcacagaagttcgaccccggcaagaccaccagcaccagcaccaaagtacag
cctcttcctcagtccgctccccctcctcctgcctacatcccaaacccgggccctgcccca
ggccccgcctgcgccccctccccctacatccccacccccctcccacctgtggcccgggga
gtggcgcagagggccgaacgcgtcgctgccggcagcaggacacccatgtgtggcgcatgc
aaccaaatcatcagaggacctttcctggtggccctgggccgctcttggcacccggaggag
ttcaactgccactactgcaacaactctctggctgacaacagctttgtggaggagcagaac
agcgtgtactgcgagaactgctacggcgagtactttgccccatcctgtgcccgctgcaac
accaagatcatgggggaagtgatgcatgcgctccggcagacttggcacaccacctgtttc
gtgtgtgctgcgtgcgggaagccctttggaaacagcctgttccacatggaggacggagaa
ccgtactgtgagaaagattacatttccctcttcagcactaagtgccatggctgtgacttc
cccgtggaggccggggacaagttcatcgaggctctggggcacacctggcacgacacctgc
ttcgtctgcgcggtgtgcaatgtcaacttagagggccagccattctactccaagaaggac
aagcctctgtgcaagaagcatgctcatgccatcaatgtgtag
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