Clupea harengus (Atlantic herring): 105900314
Help
Entry
105900314 CDS
T09045
Symbol
nfkb2
Name
(RefSeq) nuclear factor NF-kappa-B p100 subunit
KO
K04469
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04010
MAPK signaling pathway
char04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
105900314 (nfkb2)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
105900314 (nfkb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105900314 (nfkb2)
Transcription factors [BR:
char03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
105900314 (nfkb2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
105900314
NCBI-ProteinID:
XP_031434945
Ensembl:
ENSCHAG00000021945
UniProt:
A0A6P8GJ74
LinkDB
All DBs
Position
13
Genome browser
AA seq
943 aa
AA seq
DB search
MTNIWTSHLELQSKIRSDDPVANGMSGGLRMDESQYNMKMLESELLMDNSYNHFMPHLDI
KNEPFVIETVDGPYLQIIEEPKQRGFRFRYECEGPSHGGLPGASSERNRRTYPTVKVCNY
VGHARVEVQLVTHTDPPRVHAHSLVGRQCNENGTCTMDIGPNDLQAQFSNLGILHVTKRG
VQDVLVKRLREERRRPAESTYHFSDSDDQAIANEAKELTKSMDLNIVRLKFTAYLQDSTG
AFTRALKPVISVPIYDSKSPNASNLKISRMDKSCGSVMGGDEIFLLCDKVQKDDIDIRFF
EEDDEGGWEAYGDFSPTDVHKQYAIVFKTPAYHSTEIEKSVTVFLQLKRKKGGDCSEPKQ
FTYVPHVQDKEEVQRKRQKSLPQPRFDSWPGPQGGAGGSGRGAGGFGGAGGGLGGGAGFR
YDNQMDGSGFYGGGCGGFGSGGVLHMSAGGAQTGVRASTPSPTHVQQQILRMAAALQHKA
TYTAKRTARALHEYCSSGDVRPLLDVQRHLCGVQDENGDTPLHLAIIHLQPAVVQQLLHC
IVRIPQQNIINRLNHLGQSPLHLAVITRQLKVVDVLMRVGADPSLLDKDGRTVVHLAAHA
GDETTLRLLLAHLGERHAHLVNTADFSGLHPLHLAVRRGGERCLRLLVESGAKINAHERK
SGCTALHLAVKESLFKVACTLITELKADLNVCTFGGNSPLHLAASQGSPPLCSMLIAAGA
NKNLENDEPLVFSSSSSDEDEEDRHLRPAAGSRQAEDDIGAQVQVMAASLERVQINPRKR
PAGGHKAFDLAKCQKVRNILDTSHSPKPSPHTVKRPKQSTEESAGGSQQLDVEMLEKLCG
LLDQSHVPWKELAEKLGMLTLAHLYQESPSPCQNLLENYQLAGGPVEGLVEALQSLGLNE
GVRLLRQTQLREDKQNTDTTVDSGFGSQGMEEEDSERPAMATS
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgaccaatatctggacttcacatttggagttgcagagcaaaatcagatctgatgaccct
gttgcaaacggcatgtcgggaggactgagaatggacgagtcccagtacaacatgaaaatg
ctagagagtgagttgctaatggacaacagctacaatcatttcatgccacatttagacatt
aagaatgaaccttttgtcatcgaaacagttgatggaccctatttacaaatcatagaggaa
ccaaaacagcgaggctttcgcttccgatatgaatgtgagggtccgtcgcacggagggctg
cctggagcttccagtgagaggaacaggaggacgtaccctactgtcaaggtgtgtaactat
gtggggcacgctcgggtggaggtacagctggtgacccacaccgacccgccgcgtgtccat
gctcacagtctggtggggaggcagtgcaacgagaacgggacctgcaccatggacatcgga
cccaatgaccttcaggcacagttcagtaatttgggtattttgcacgtcaccaaacgggga
gtacaggacgtgctggtgaagagactgagagaggagaggagaaggccggccgagtcaacc
taccatttcagtgactcagacgatcaggcgatcgctaacgaggccaaagagctgaccaag
tccatggacctcaacattgtgcggctgaagttcacggcatacctccaggacagcactggg
gccttcaccagagccctgaagcctgtcatctccgtccccatctacgacagcaaatccccc
aacgcctccaacctgaagatctcacggatggacaagagctgtggctctgtgatgggaggt
gatgagatttttctgctctgtgataaagtgcaaaaagatgacattgacattcgcttcttc
gaggaggatgatgaggggggctgggaggcctatggggatttctctcccacagatgtgcac
aaacagtatgccatcgtgtttaagacgccagcgtaccacagcacagaaatagaaaaatct
gtcacagtgttcctgcagctgaagaggaagaaagggggagactgcagtgagcccaagcag
ttcacctacgtcccccatgttcaagataaagaggaagtccagcggaaacggcaaaagtcc
cttcctcagccgcgcttcgactcgtggccggggccccaggggggtgcaggcggctcgggg
aggggcgcaggagggtttggaggcgcaggcggaggcctgggaggcggagcaggcttccgc
tatgacaaccagatggatggctcaggcttctacggcggcggctgtggaggattcggcagc
ggcggagtcctgcacatgtctgctggcggcgcccagacgggggtcagagccagcaccccg
tcacccactcacgtgcagcagcagatcctgcggatggctgccgccctgcagcacaaggcc
acatacacagccaagcgcacggcccgcgctctccacgagtactgcagcagcggggacgtg
cgccccctgctggacgtgcagaggcacctgtgtggcgtgcaggacgagaacggagacacg
cccctgcatctggctatcattcacctgcagcctgcggtggtgcagcagctgctccactgc
atcgtccgcatcccgcagcagaacatcatcaacagactcaaccacctgggccagtctcct
ctgcacctggctgtgatcacccgacagctgaaagtggtggacgtgctgatgagggttgga
gcggacccctcgctcctggacaaggacgggcgcactgtcgtccacctggccgcccacgct
ggcgacgagaccacgctccgcctcctgctcgcacacctgggcgagagacacgcccacctg
gtcaacacagcagacttctcaggcctccacccgctgcacctggccgtgaggaggggaggc
gagcgctgcctgcgcctcctggtggagtcaggggcgaagatcaacgcccacgagcggaag
agtggctgtaccgccctgcacctggccgtgaaggagagcctcttcaaagtggcctgcacg
ctcatcaccgagctgaaggcagatctgaatgtctgcaccttcggggggaatagtccactc
cacttggctgccagtcaaggctccccccccctctgttccatgcttatcgctgcaggtgcc
aacaaaaacctggagaacgatgagccgctcgtcttcagctcttcctcctcagacgaggat
gaggaggacagacacttgagaccagctgcaggtagcaggcaggctgaggatgatatcggt
gcacaggttcaagtcatggcggcgtccctggagcgggtccaaataaacccacgcaaaagg
ccggccggaggacataaagcgtttgacctggccaagtgtcagaaggtgagaaacatcctt
gacaccagccacagtcccaagcctagtccccacacagtcaagagacccaaacagagcaca
gaagaaagtgctgggggaagtcagcagctggacgtggagatgctggagaagctgtgtggc
ctcctggatcagagccacgtgccctggaaggagctggcggagaagctgggcatgctcacg
ctggctcacctgtaccaggagagtccatcaccctgtcagaaccttctagagaattaccag
ttggctggaggtccagttgaaggactggtggaagccctgcagtctttgggtctgaatgag
ggggtgagactgctgagacagacacagctcagagaagacaagcagaacacagacacgacg
gtggacagcggcttcgggagtcaggggatggaggaggaggacagcgagcgccctgccatg
gcaacttcttaa
DBGET
integrated database retrieval system
