Clupea harengus (Atlantic herring): 105900332
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Entry
105900332 CDS
T09045
Symbol
rbbp5
Name
(RefSeq) retinoblastoma-binding protein 5 isoform X2
KO
K14961
COMPASS component SWD1
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
char03036
]
105900332 (rbbp5)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
105900332 (rbbp5)
COMPASS/SET1 complex (yeast)
105900332 (rbbp5)
MLL-HCF complex
105900332 (rbbp5)
MLL3/MLL4 complex
105900332 (rbbp5)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WD40
Beta-prop_EML
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT122_1st
Beta-prop_SPT8
WDR54
Beta-prop_LRRK2
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_WDR11_1st
Beta-prop_NUP159_NUP214
Beta-prop_WDR75_1st
VPS8_N
Beta-prop_RIG_1st
Beta-prop_EIPR1
BUD22
Motif
Other DBs
NCBI-GeneID:
105900332
NCBI-ProteinID:
XP_012683075
Ensembl:
ENSCHAG00000001651
UniProt:
A0A6P3VWF1
LinkDB
All DBs
Position
5:complement(2474496..2481950)
Genome browser
AA seq
512 aa
AA seq
DB search
MNLELLESFGQNYPEEADGTLDCISMALTCTFNRWGTLLAVGCNDGRIVIWDFLTRGIAK
IISAHIHPVCSLSWSRDGHKLVSASTDNIVSLWDVLTGDCDQRFRFPSPILKLQFHPRDQ
DKVLVCPMKSAPVLLTLSDSKHVVLPVDDDSDLNVVAAFDRRGEYIYTGNAKGKILVLNT
DTQDLVASFRVTTGTSNTTAIKSIEFARKGSCFLINTADRIIRVYDGREILTCGRDGEPE
PMQKLQDLVNRTPWKRCCFSGDGEYIVAGSARQHALYIWEKSIGNLVKILHGTRGELLLD
VAWHPVRPIIASISSGVVSIWAQNQVENWSAFAPDFKELDENVEYEERESEFDIEDEDKS
EPEQTGADAAEDEEVDVTTVDPIVAFCSSDEELEDFKALLYLPIAPEVEDPEENPFGPPP
DAAGQTSAAEDGTVHTGSGDKKRQPSSDGAPPKKKARTTTIELQGVPSDEVHPLLGVKGD
GKSKKKTAGRPKGSKGNLVTPSYKQHDVQGLD
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgaatctagagctgctcgagtccttcgggcagaactatcctgaggaggcagatggcacc
cttgattgcatcagtatggcgcttacctgtaccttcaaccgctggggtacactgttggca
gtcggctgcaatgatggccgtattgtcatttgggactttcttacacggggcattgccaaa
atcataagcgcacacatacatccagtctgttcactaagttggagtcgagatggtcacaag
ctagtcagcgcctctacagataacattgtgtccctgtgggatgttctgacgggggactgt
gaccagaggtttcgcttcccctcgcccattctcaagctccagttccacccaagagatcaa
gacaaagtccttgtttgtcccatgaagtcggcccctgtgttactcacgctgtcagactcc
aagcatgtggttcttcctgtggacgacgactccgaccttaacgtagtggccgcattcgat
cggaggggggagtacatctatacaggcaatgccaaaggaaagattcttgttctgaacaca
gacacccaggatcttgtagcatcattccgggtaaccaccgggaccagtaacactacagcc
atcaagtctatagagtttgcgcgcaaaggcagctgtttcctcataaacacggcagaccgt
atcatcagagtgtatgacggacgggagattctcacctgcgggagggacggtgaaccagag
cccatgcagaagctacaggacctggtgaacaggacaccatggaaacggtgctgtttctct
ggcgatggagagtacatagtggctggctctgcccggcagcatgccctctacatctgggag
aagagcattggcaacctggtcaagatcctgcacggcacacgtggagaactgctgctggat
gtagcgtggcatccggttcggccgataatcgcctcaatttccagtggggtcgtatctatc
tgggcccagaaccaagtggaaaactggagtgcctttgctccagacttcaaagagttggat
gaaaatgtagaatacgaggagagggaatcggaatttgacattgaggatgaggacaaaagt
gaaccagaacagaccggtgcggatgccgcagaggatgaggaggtggacgtcacgacggtg
gaccccattgtggctttctgcagcagcgatgaggagctggaggactttaaggccctgctg
tacctgcccattgctccagaggtggaggaccccgaagagaaccctttcggccccccgcct
gacgctgcgggtcaaacctccgccgccgaagatgggactgtacacacgggctcgggagac
aagaagcgccagccatcatcagacggagctccgccgaagaagaaggcacggaccaccacc
atcgagctgcagggcgtgcccagtgacgaggtgcacccgctgctgggtgtgaagggcgac
ggcaagtctaagaagaagacagcgggtcggccgaaaggctccaaaggtaatcttgttaca
ccatcctacaaacagcatgatgtccagggcttggactga
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