KEGG   Clupea harengus (Atlantic herring): 105900386
Entry
105900386         CDS       T09045                                 
Symbol
vps11
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
  KO
K20179  vacuolar protein sorting-associated protein 11
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char04140  Autophagy - animal
char04148  Efferocytosis
char05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:char00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    105900386 (vps11)
   04148 Efferocytosis
    105900386 (vps11)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    105900386 (vps11)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:char04131]
    105900386 (vps11)
Membrane trafficking [BR:char04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    105900386 (vps11)
   Hops complex
    105900386 (vps11)
SSDB
Motif
Pfam: PEP5_VPS11_N TPR_PEP5_VPS11 VPS11_N VPS11_C TPR_Vps41 Clathrin zf-C3HC4_2 zf-rbx1 zf-RING_2 zf-C3HC4 zf-C3H2C3 zf-RING_5 TPR_GEMI5 Beta-prop_EML_2 zf-ANAPC11 ToxA_N zf-RING-like zf-RING_UBOX ADIP zf-C3HC4_3 WDR55 zf_RING_Vps8_fungal
Other DBs
NCBI-GeneID: 105900386
NCBI-ProteinID: XP_012683137
Ensembl: ENSCHAG00000026545
UniProt: A0A6P3VWT3
LinkDB
Position
8:complement(15955497..15962439)
AA seq 926 aa
MAAFLQWRRFVFFDKETVKDPGENGKNFMLPIGISACDSGRGHIVLGDMEGQIWFLTRSL
QLTSFQAYKLRVTHLYQLKQHSILVSVGQDEQGINPLVKVWNLDKRDSGNPLCTRIFPAI
PGNKPTEVSCLSVHENLNFMAIGFTDGSVVLTKGDITRDRHSKTLTLHEGTCPITGLAFR
QAGKVTHLFVATLEKVQCYTLSVKEYPKLELDTHGCALRCSALTDPSQDSQFIVAGDDCV
YLYQPDERGPCFAFDGHKLLAHWHRGYLLLLTRDAKSPNKPEFASRETSPTEKQVLTIYD
LDNKFIAYSAAFDDIIDVLAEWGSFYVLTRDGKIFVLQEKDTQTKLEMLFKKNLFVMAIN
LAKSQHLDNDGLSEIFRQYGDHLYIKGDHDGAIQQYIRTIGKLEPSYVIRKFLDAQRIHN
LTAYLQALHRQSLPNADHTTLLLNCYTKLKDSSKLEEFIKSSESEVHFDVEIAIKVLRQA
GYHSHAVFLAERHMHHEWYLKIQLEDLKNYQEALRYIGRLPFEQAESNMKRYGKTLMLHV
PEDTTLLLKGLCTDYHPSQDSSDRDHAGRASINTASPEEFIPIFANNPRELKAFLEHMIE
VEPLSSQGVYDTLLELRLQDWAHEQNPEKKKVLQGAALSLLRSDNTVFDKALVLCQMHNF
KEGILYLYEKGKLYQQIMHYHMQNEEYGKVVEACKRFGDQEVCLWEQALGYFARKEEDCK
AYISEVLQHIDQNNLMPPLLVVQTLAHNSTATLSVIKDYLINKLQRESLQIEDDDRKIRQ
YREETAHLRSEIQELKSSAKIFQKTKCSMCNSPLELPSVHFLCGHSFHQHCFESYAESEA
ECPTCTPENRKVMDMLRAQDQKRDLHDHFNRQLRCSNDGFSVVADYFGRGVFNKLTLITD
PPGKAMAGSLEADLQRDLLIHTKRNA
NT seq 2781 nt   +upstreamnt  +downstreamnt
atggctgcgttcttacagtggaggcgatttgtgttttttgataaagaaacagtgaaagac
cctggagaaaatggcaagaatttcatgttaccaatcggaatatcggcttgtgattccggg
cgaggtcacattgtactcggagatatggagggtcagatttggtttttgacacgatccttg
cagttgacgtcttttcaagcttacaaacttcgtgtgacacacctttatcagcttaaacaa
cacagcatcttggtgtctgttggccaggatgagcaggggataaatcctctcgtgaaggta
tggaatttagacaagagggacagtggaaatcctttgtgtacacggattttcccagccatc
cctggaaacaaacctacagaggtgtcctgccttagtgtgcatgaaaatctcaacttcatg
gctattggctttacggatggcagcgtggttctgacaaaaggagatatcaccagggacagg
cacagtaaaaccctgactcttcatgagggcacctgcccaatcacaggtcttgcctttcgc
caggctggcaaggtcacacatctgtttgttgccacccttgagaaggttcagtgctacacc
ctgtcggtgaaggaatacccaaaactggagctggatacacacggctgtgcgctacgctgt
tccgcactaacagacccctcacaggactctcagttcattgtggccggagatgactgcgtc
tacctttaccagcctgatgagcgggggccctgtttcgctttcgatggacataagctcctg
gcacactggcacaggggatatctgttgttactcactcgagatgcaaagtcacccaataaa
ccagaatttgcaagcagagagacctctccaactgaaaagcaagttttgaccatctacgat
ctggacaacaagtttatagcttacagtgctgcatttgatgacatcattgatgtgctggca
gaatggggctcgttctatgtcctgacccgagatgggaagatattcgttttgcaagagaaa
gacacgcagaccaagctggagatgttgttcaagaagaacctttttgtgatggccattaac
cttgccaagagtcagcacttggacaatgatggcctgtctgaaatcttcaggcaatatgga
gaccatctctacattaaaggagaccacgatggagccatccaacagtatatccgcacaata
ggaaagcttgaaccttcctatgtgatccgcaaattccttgatgcacagaggatccacaac
ctgaccgcatacctacaggccttgcacagacaatcactcccgaatgccgaccacaccaca
ctactactcaactgctatactaaactaaaggacagctccaaactagaggagttcataaag
agcagtgaaagtgaagtccactttgacgtggagattgccatcaaggtactccgtcaagct
ggctatcacagtcacgctgtgttcttagcagagaggcacatgcatcatgaatggtatttg
aagattcagcttgaggatctcaagaactatcaagaggctctgcgttatattggccggctc
ccatttgagcaggcggagagcaacatgaagcgctatggcaaaactctgatgctccatgtt
cctgaggacaccactctcctgctgaagggcctgtgcacggactaccaccccagccaggac
tcctctgaccgagaccatgcaggtagagcctcaatcaatacggccagtcctgaggagttc
atacccatatttgcgaacaacccacgggaactgaaagcttttctggagcacatgattgag
gtggagcccctgtcgtctcagggtgtgtatgacacgctgctggaactacgcctgcaggac
tgggcgcatgagcaaaaccctgagaagaagaaagtcctgcagggggcagcattgtcttta
ctgagaagtgacaatactgtttttgacaaagcacttgtcctctgtcaaatgcacaatttc
aaagaaggaattctttatctgtatgaaaagggcaagctgtaccagcagattatgcactac
cacatgcaaaatgaagagtatgggaaagtggttgaagcatgtaagcgctttggtgatcag
gaggtttgcttgtgggagcaggccttgggttactttgcacgtaaagaggaagactgcaaa
gcctacatcagtgaggttttgcagcacattgaccaaaataacctaatgcctccactcctt
gttgtgcagacattggctcataattcaacagccaccctttctgtgatcaaggactacctc
atcaacaaactccagagagagagtctgcagattgaggatgatgaccgcaagattcggcag
taccgggaggaaactgcccacctaagatctgaaatacaggagctgaaaagcagcgctaag
atcttccagaagaccaagtgcagcatgtgcaacagcccacttgagctcccttcagtgcac
ttcctgtgtggtcactcgtttcaccagcactgcttcgagagctatgctgaaagcgaggcc
gagtgtcccacttgcacgccagagaaccgaaaggtcatggacatgctacgagctcaggac
caaaaaagggacctgcacgatcattttaatagacagctacgatgttcgaacgatggattc
tcagtggtggctgattactttggccgtggagtgtttaataaactcaccttgatcactgat
ccccctggcaaggccatggcaggcagtctggaagctgacctgcagcgtgatcttctcatt
cacaccaagagaaatgcatga

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