Clupea harengus (Atlantic herring): 105900476
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Entry
105900476 CDS
T09045
Symbol
trpa1a
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1a
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
char04040
]
105900476 (trpa1a)
Ion channels [BR:
char04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
105900476 (trpa1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Ion_trans
MASE7
Motif
Other DBs
NCBI-GeneID:
105900476
NCBI-ProteinID:
XP_031419190
Ensembl:
ENSCHAG00000026902
UniProt:
A0A6P8F5G9
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All DBs
Position
25:8654943..8663863
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AA seq
1111 aa
AA seq
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MSIYRVHSKHAPKSYEEVMAEEDIAKMRASVFEWAEQGNVVALEKHLAYLTITDHTGACP
LHYATSRGHLQTIQLIAQVAGVKELNAADQDGNTPMHWAVQRDQRESCSALLTLGADPNV
LNTGIQSPLHLAVSLGHNTLVEELLSHSQTDVDIEGELGNTPVMIACATDNHQALHALFK
RGAKFCSKNKLGHFPIHAAAFAGAKESMQVILQRGEEMGHSIEAHINYVDKFCNSPLHLA
VRGGSLEVIQLCMAYGAKINRQQCDKSTALHSACTQGATEAVKVMLSACGSISDVLKITD
GSSQTPLHKAAIFDHHELAEYLISKGADIDCTDYKGHSPLLLATSCGAWKTVNLLLSKGC
NFTLKDPNGCNFLHLTILQPRGLRNLPAEFLQHERVRELLREEDGDGCTPLHYACKLGVP
DSVRSMLGLEVSPNQKTKQKKSALHFAAEYGRINTCYRLLETLTDTRLLNEGDEGGMTPL
HLASRNGHVRVVELLLCRGALCQSDYKGWSCLHHAAAEGYTQTMDTLLGSHVKLLDKTDD
DGNTALHLAAREGHAAAVGLLLRRGAQMLLNKSEASFLHEAIQNNRREATEVVIESDRCA
EALTTFNPRSAKRCAVQDMIELLPDTFKHLLDTCIKESEEDPGSRNYWIEYNFQWLQTPL
RFVKQARMDKGIGFKPLPALNTMVHNNRVDLLTHPVCSQYLEMKWKAYGVKVHLLNMAVY
LLGLIPLTYLILNLRPVLKMDVNNSSITEVTMVTTSLHQQCNIINLCLFLTLAMNLHCMG
KEIVQMYQQKQGYLRDVTNVMDWLSAITSVVFVVALLLDLKSDWHWQIGALAVLSGWINL
LLYLQRFRRFGIYVVMFREISKTLMSIISIYIYLILAFALSFHALMINQKNFGDLPVLTL
VQTFVMMVGEINYQDNFLKPYLQGNLPFPILTFIIFIAFVLLAPILLVNLLIGLAVGDIA
KVQKNATLKQIAMQIELHTNLEEKLPYWFMKWVDQATVRVYPNRCFEKTRSFIFSLLGEE
PQEGRTRLGQTSRQSTPPEQELAKQKHRIKEISSLVEKQHNLLKLIMQKMEIVSESEYTD
GPKGFHSHMHSLCSRSDKWAPVLRAAMAKRV
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgtctatctacagggtacattccaagcacgcacccaagtcctatgaggaagtgatggct
gaagaggatatagccaagatgagggcaagcgtgtttgaatgggctgagcagggtaacgtg
gtggcgttggagaaacatctagcatatctgaccatcacggaccacactggagcttgtcca
ctgcactacgctacatcgagaggacatcttcagaccatacaactgatcgcacaagtagca
ggagtaaaagagctgaatgccgctgaccaggatggcaatactccaatgcactgggctgtg
cagagggaccagagggagagctgctctgcgctcctcacccttggggctgatccgaacgtc
ttgaacacgggcattcagtctccactccacttggctgttagtctgggccacaacaccttg
gtggaggaactcctctctcacagccagactgatgttgacatagagggagagcttggaaat
acccctgtaatgatcgcttgtgcaacagacaaccaccaagctcttcatgcattgttcaaa
cgtggggcaaagttctgtagcaaaaacaagttgggacactttccaattcatgccgctgct
tttgcaggggcaaaagaatccatgcaggttattcttcaaaggggagaggagatgggtcat
tccattgaggcacatattaattatgtggacaaattctgcaacagcccccttcatctggcg
gttcggggaggaagccttgaagtcattcagctctgcatggcatatggcgccaaaataaac
agacagcaatgtgataaatcaaccgctctccactcagcttgtacccaaggggccactgag
gcagttaaggtcatgctctcagcatgtgggagcatcagtgatgtcctcaaaatcacagat
ggatctagccaaacccctctgcacaaggcagccatttttgatcatcatgaactggcagaa
tatctcatctcaaagggtgctgacattgactgcactgactacaagggacattctccatta
cttctggccacaagctgcggtgcctggaaaactgttaacctactgctctcaaaagggtgc
aattttacactcaaagatccaaatggatgcaacttcctgcacctcaccatattgcagcca
agaggcctccggaaccttccagctgaatttttacagcatgagagagtgcgagagctcctt
cgtgaagaggacggtgatggttgtactccgctccactatgcctgcaagctgggagtccct
gactcagtgaggagcatgctggggctggaggtgtcccctaaccagaagaccaaacagaag
aagtctgctctgcattttgctgctgagtatgggaggataaatacctgctacaggctactg
gagacgttgacggacaccaggctgctgaatgaaggcgatgaggggggcatgacccctctc
cacttggcatctaggaatggccatgtccgagtggtagagcttctgctctgtagaggagct
ctgtgtcagagcgattataagggatggtcgtgcttgcaccatgcggcggccgaaggctac
actcagacgatggacactctcctgggatcacacgtcaaactgctggacaaaacagatgac
gatggtaacacagccctgcacctggcagcccgtgagggccatgcagcagcagtcggactg
ctcctgagaaggggagcgcagatgctgctcaacaagagcgaggcctcctttctgcacgaa
gccatacagaacaacaggagagaggccactgaagtagtgattgagagcgacagatgtgcc
gaggccctcaccacattcaacccccgctcagccaagcggtgcgctgtacaggacatgatt
gaattgcttcctgacaccttcaagcatcttcttgacacatgcataaaggaatcagaagag
gaccctggcagcagaaactactggatcgagtataatttccagtggcttcaaactcccctt
cgatttgtgaagcaggcaagaatggacaaaggcataggctttaagccccttccagctctg
aatactatggtgcataacaaccgtgttgatctactgactcatcctgtctgcagtcagtat
ttagagatgaaatggaaagcctacggggtcaaagtgcatctactgaacatggctgtatat
ctcctgggtcttatcccactgacctatctcattttgaatctgagacccgttctcaaaatg
gatgttaacaactcttctattactgaggtcaccatggttaccacgtcattacaccagcaa
tgcaatatcataaacctgtgtctattcctgactctggcgatgaatctgcactgtatgggg
aaagaaattgtgcagatgtatcaacagaaacaaggttatctacgagacgtgaccaacgta
atggactggctctcagccatcacgtctgtggtatttgtggtggctttactgctggacttg
aagagtgactggcactggcagataggggcgctggcagtgctctccggctggataaacctc
ctgctctacctacagcgctttcgacggtttgggatttacgtggttatgttcagagagatt
tcaaagacccttatgagcatcatctccatctacatttatttgatacttgcttttgccttg
tccttccacgccctgatgattaaccagaaaaactttggcgatctgccagtcttgacacta
gtgcagactttcgtcatgatggtgggagagatcaactaccaagacaacttcctgaaacct
tatttacagggaaaccttcccttccccatcctcacgtttataatatttattgcatttgtc
ctactggcaccaattctgcttgtgaaccttttgattggtctggctgttggtgatatagcc
aaagtccagaaaaacgctactctcaagcaaattgcaatgcaaattgaactgcacactaac
ctggaagagaagcttccgtactggttcatgaagtgggtggaccaggctacggtccgagtg
taccccaacagatgttttgagaagacaaggagcttcatcttctccctccttggggaagaa
ccacaggaagggaggacccggctcggccagacctcccgtcaatcaactcctccggagcag
gaactggccaaacagaagcacagaattaaagagatatccagcctcgtggagaagcagcat
aacctcctgaagctgatcatgcaaaagatggagatcgtctcggagtcagagtatacggac
gggcccaagggcttccattcccacatgcacagcctttgctcgaggtcagataagtgggcc
cctgtcctcagagcagcgatggccaagagggtatag
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