Clupea harengus (Atlantic herring): 105900488
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Entry
105900488 CDS
T09045
Symbol
yod1
Name
(RefSeq) ubiquitin thioesterase OTU1 isoform X2
KO
K13719
ubiquitin thioesterase OTU1 [EC:3.1.2.-]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
105900488 (yod1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
char01002
]
105900488 (yod1)
Peptidases and inhibitors [BR:
char01002
]
Cysteine peptidases
Family C88
105900488 (yod1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2_OTU1_C
OTU
OTU1_UBXL
Ubiquitin_2
zf-C2H2_2
Toprim_C_rpt
Motif
Other DBs
NCBI-GeneID:
105900488
NCBI-ProteinID:
XP_012683263
Ensembl:
ENSCHAG00000009252
UniProt:
A0A6P3VWK3
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Position
5:2861900..2865555
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AA seq
305 aa
AA seq
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MLRLRCKAKNGTHLMQGLTHQSCVQELKDKVEELTGISCDVQKIMVGYPPSSLDFRNGDA
TLKDYPIKSGDTLIVEEEKNKPKPQTPAAPNNTTKGPSLDFTVPTLERRVVPADNSCLFT
SVHYVVEGGVYDLACAPEMRSLIAQIVASDPTAYSEAVLGKTNEEYCAWIRREDTWGGAI
EVSILSKFYQCEICVVDTQTVRVDRFGEDAGYHKRVLLIYDGIHYDPLQKVVAGSDAPPQ
TVFPTVDDVTLAQALELADEARRKRQFTDVNRFALRCMVCQMGLVGQKEARQHAKDTGHT
NFGEV
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgtctgcgttgcaaggccaaaaacggcacccatctgatgcagggcctcacacat
caatcatgcgtccaggagctgaaagacaaggtggaggagttgaccgggatctcgtgtgat
gtccagaaaattatggtgggctaccctccctccagccttgactttcgcaacggagacgcc
accctaaaagactaccccatcaaatcaggtgacacgctcattgtagaggaggagaagaac
aagcctaagccccagacacctgcagctcccaataacacgaccaagggcccctccctggac
ttcaccgtgccgacgctggagcgcagagtggttccagccgacaactcctgcctgtttacc
agtgtgcactacgtggtggaggggggcgtgtacgacctggcgtgcgcccccgagatgcgc
agcctcatagcccagatcgttgccagcgacccgacggcctactcggaggctgtgctgggc
aagaccaacgaggagtactgcgcctggatccggcgcgaggacacgtggggcggcgccatc
gaggtgtccatcctgtccaagttctaccagtgcgagatctgcgtggtggacacgcagacg
gtgcgcgtggaccgcttcggtgaggacgccggctaccacaagcgcgtgctgctcatctac
gacggcatccactacgacccgctccagaaggtggtagccggctcggacgcgccgccccag
acggtgttccccacggtggacgacgtgacgctagcgcaggccctggagctggcggacgag
gcccggcggaagcggcagtttacggatgtcaaccgcttcgcgctgcgctgcatggtgtgc
cagatgggcctggtgggacagaaggaggcgcggcaacacgccaaggataccgggcacacc
aactttggggaggtgtga
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