Clupea harengus (Atlantic herring): 105900577
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Entry
105900577 CDS
T09045
Symbol
myom1a
Name
(RefSeq) myomesin 1a (skelemin) isoform X1
KO
K24495
myomesin
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
105900577 (myom1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
char04990
]
105900577 (myom1a)
Domain-containing proteins not elsewhere classified [BR:
char04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
105900577 (myom1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
fn3
Ig_3
Ig_DSCAM-DSCAML_C
Ig_2
ig
V-set
Pur_ac_phosph_N
C2-set_2
C2-set_3
FlgO
B-CoV_A_NSP1
Motif
Other DBs
NCBI-GeneID:
105900577
NCBI-ProteinID:
XP_031418956
Ensembl:
ENSCHAG00000005686
UniProt:
A0A6P8F449
LinkDB
All DBs
Position
25:complement(7552336..7574008)
Genome browser
AA seq
1486 aa
AA seq
DB search
MSGSLHKQHHSHHESSHKQTSHLEKSVTQSHTVKRSIRRTVKATAVAEKAEETLTTLSKK
AKRNYLAVDTDSHVIGYVVPVFRSSHLVARDLAEAQEEVKEEGIGYVVMKNLFSKEEDFK
MKVETKTRKTTIRESADLLTLGKKIHEKQEFTKKMNADSLTHPPEFMVKPKGQTVWEGKS
VTLHCTLAGWPKPRVAWYKNNVPIDAKAHPDKYTAESNYNMHSLKIQSCDFNDTAEYRVS
GLNIKGESSSFAHVVVKRYQEGEKVVAKPHGFSDEFGVTFRTTIIDKFAVAFGHEGETLS
LGCTVIVYPTVKRYTPEVLWYRDSVLLKPSKWVHMHWSGEKATLTLAHLNKEDEGLYTLR
INTKSGFETYSSYVYVKDADVEVEGAPVAPLDVRCHDANKDYVVVTWKQPAVEGSSPIVG
YFIDRCEIGTTHWAQCNETPVKYARFPVTGLVEGRSYTFRVRAISKAGASRPSRVSDTVV
AMDPSDRSRQRAGPSAPWTGMIKFTEEEPTGGVVPGEPTHLAVIEATKSYVVLSWKPPAQ
RGHEGVMYYIEKCVSGSDNWQRVNSGMPSKSPRFAVFDLAEGKSYNFRVRCSNSAGVGEA
SAPTDATTVGDKLDLPSAPGAVVAIRNTASSVVVSWGKSKDVKHLVGYYIETSVEGSNVW
VPCNNKPVKCTRFVCHGLNTGDKLVFRVKAVNASGYSTHSALSEAVIVKASVAISGPPSG
VKMAERLRDYMVISWQPPAKSGGADIVGYYVDYRTVKGGVTGQWHELNTQAVTGTSYKAE
NLKENVFYQFQVRAGNMAGVSGASLPSVGLECKEWTVAVPGPPCGLHVLEVRKTSLVLLW
EPPTFNGRSPIDGYYVDIKEAAADDNSWKCVHDRSIKLKYKKITGLKAGTAYHLRVSARN
VVGVGKPTKGLGPVVAETRPGTNEIIMDVDDDGVISMIFECSAMGEGSEFIWSKNYKELT
DTSRLTIETSGGRSRAIFNNASVEDLAIYSCKVTNTDGVSASYTLTEEVLKRLLDMSFDH
KFPVIPFKSEMAIELQEKGRVRFWAQVAKFTENCQVEYVFNDTTVTQGKKYTVNFDKSAG
IIEMYMDSLEVTDEGTYTFDLVDGKAKGRTSLVLIGEEFAVLQKKSEFERAEWVRRQGPH
FVEYLGFEVTPECNVHLKCKIGNIKAETEITWFKDSHEIQEDDEEAQKISTEDAVLTFDI
AKSVFKKDREEKKKPAAEDAPKMPKISKKDAGTYEVKLKDERGKDHSKFDLTGAGYEAVM
NEVFRVIANSSTEISIMSTEHGIILYSFVVYHTEELRVGWLLKESKISHSERVQCGVTGE
QLWLKINEPTEKDKGKYAMDIFDGQSGVKRAFDLSGQAWEDAFEEFKRLKAAAIAERNRA
RVVGGLPDVVTIQEGKSLNLTGNVWGDPAPEVTWLKNDRELVSDEHYTLKFEHGKFASIT
IAAVNTADSGKYALQVKNKYGTEAMPFTVSVYFPEDEADRKKVEKK
NT seq
4461 nt
NT seq
+upstream
nt +downstream
nt
atgtccggatccttgcacaagcagcatcacagccaccatgagagcagccacaaacaaacc
agccatttggagaagtccgtgactcagagtcacaccgtgaagaggagcatccgccgcact
gtgaaagccactgcggtagcagaaaaggcagaggaaactctgaccacgctatccaagaaa
gccaaacgcaactacctggcggttgacaccgacagtcacgtcataggatatgtggtacct
gtcttcagaagcagtcacttagtggccagagacctggcagaggcccaggaggaggtcaag
gaggaagggatcggctatgtggtcatgaagaacctcttctccaaagaagaagactttaag
atgaaggtggagacgaagaccagaaagacgaccattagggagtctgctgacctcctgact
ttgggcaaaaagattcatgagaagcaggagttcacgaagaagatgaatgcggacagcctc
acccacccccctgagttcatggtgaagcccaagggccagaccgtgtgggaggggaagagc
gtgacactgcactgcaccttggccgggtggcctaaaccacgcgtggcctggtacaagaac
aatgttcccatcgacgccaaggctcaccctgacaagtacaccgcagagagcaattacaac
atgcactctctgaagattcaaagctgtgatttcaatgacactgctgagtatcgtgtgtca
ggccttaacattaagggggagagttcctccttcgcccatgttgttgtaaaaagataccaa
gagggcgaaaaggttgttgccaaaccacatggcttctctgacgagttcggagtcaccttc
aggaccactatcattgataagtttgcggtggcctttggccatgagggcgagaccctgagc
ctgggctgcactgtgatcgtctacccaaccgtcaagcgctacacgcctgaagtgctgtgg
tacagagatagtgttctcctgaagccctctaaatgggtgcacatgcactggagtggagag
aaggccacgctgaccctggcccacctcaacaaggaagacgagggcctctacaccttgcgt
atcaacaccaagtctggctttgagacctactcttcttacgtctatgttaaagatgctgat
gtggaggtggaaggtgcccctgttgctcctctggatgtgagatgccacgatgccaataaa
gactacgtggtggtgacctggaagcagccagccgtggagggcagtagtcctatcgtgggc
tacttcattgacaggtgtgagattggcacaacccattgggctcagtgcaacgagactccg
gtgaagtatgcccgcttcccagtgacgggcttggtggagggccgctcctacaccttcagg
gtgcgcgccatcagcaaggctggcgcgagccgaccctcacgcgtctctgacaccgtggtt
gccatggatccctccgaccgctcccgtcagagagctggtccctccgctccctggactggg
atgatcaagttcactgaggaggagcccacagggggagtggtccccggtgaacccacccat
ctggcggtcattgaggccaccaagagctacgtggtgctgagctggaagcctccagcgcag
aggggtcatgagggggtcatgtactacatcgagaagtgcgttagcggttcagataactgg
caaagggtgaactcgggcatgccgtccaagtccccacgctttgccgtgtttgacctggca
gagggcaagtcctacaacttccgcgtccgctgctccaactccgctggtgtcggggaggcc
tccgcccctaccgatgccaccactgtgggagacaaacttgacctcccctcagctccaggt
gccgtggtggccattaggaacactgcctcgtctgtggtggtgagctggggcaagagcaag
gacgtgaaacacctcgtgggctattacatcgagaccagcgtggagggcagcaatgtgtgg
gtgccctgcaataacaagccagtcaagtgcacaaggtttgtctgccatggactgaacact
ggggacaagctggtgttcagggttaaggcagtgaacgcttcaggatacagcacccactct
gctctctctgaggctgttattgtgaaagccagtgttgccatctctgggcctcccagcggc
gtcaagatggcggagcgcctgcgcgactacatggtgattagctggcagcctccagctaag
agcggcggggcagacatcgtgggttactatgtggactacaggacagtcaagggaggcgtc
accggccagtggcatgagctgaacactcaggcggtcactggaacctcatataaagcggag
aacctgaaggagaatgtcttttatcaattccaagttcgtgccggcaacatggcaggcgtt
agtggagcctccttgcccagtgtgggactggagtgcaaagaatggaccgtggcagtgcca
gggcctccctgtggcctccatgtgctggaggtgcgtaagacctccctggtgctgctgtgg
gaaccccccacattcaacggacgcagtccaatcgacggctactacgtggacatcaaagag
gccgcggctgatgataactcctggaagtgtgtccacgatcggtccatcaagctcaagtac
aagaagatcactggtctgaaggctggtacagcctaccatcttcgcgtcagtgctcgaaac
gtggttggcgttggcaagcctaccaaggggctcggtcctgttgttgcagagacacgccct
ggcaccaacgagatcattatggatgtggatgatgacggcgttatctctatgatctttgag
tgctctgcaatgggcgagggttcagagttcatatggtccaagaactacaaggagctcaca
gacacctctcgcctcaccattgagacgtctgggggcaggtccagggccatcttcaacaac
gcatctgtggaggacctggccatctactcatgcaaggtcaccaacacggatggcgtctca
gccagctacacactcactgaggaggtactgaagcgcctgcttgatatgagctttgaccac
aaattccccgttatacccttcaagtctgagatggctattgagctgcaggagaagggcagg
gttcgcttctgggctcaagtggctaagtttacagaaaactgccaagtggaatatgtgttc
aatgacaccaccgtcacccagggaaagaaatacacggtgaactttgacaagagcgcaggc
atcattgagatgtacatggactcgctggaggtcactgatgaaggaacctacaccttcgac
ctggtcgatggaaaagcgaagggccgcaccagccttgtgttgattggagaggaatttgct
gttctacagaagaagtcagagttcgagagggcagaatgggtcagaagacaaggccctcac
tttgtggagtatcttggcttcgaggtgaccccagaatgcaatgtgcatttgaaatgcaag
attggaaacatcaaagcagagaccgagatcacctggtttaaggatagtcacgagattcag
gaggacgatgaggaggcacagaaaatcagcactgaagacgcggtgctgaccttcgatatt
gccaagagtgtgtttaaaaaagacagagaggaaaaaaagaaacccgctgctgaggatgcc
cccaagatgcctaaaatttcaaagaaggatgctggtacctatgaggtcaaactgaaggat
gagagaggaaaggaccacagcaagttcgatctgacaggcgcaggttatgaggcggtcatg
aacgaggtgttcagagtcatcgcaaactcctccacggaaatcagtattatgagcacagaa
cacggcatcatactttactctttcgttgtgtatcacactgaggaacttcgtgttggctgg
ctgctcaaagagtctaagatctcccactcggagagagtgcagtgcggtgtgactggggag
cagctgtggctcaagatcaatgagcccacagagaaagacaaggggaagtatgccatggac
atctttgacggccagagtggcgtcaagagggcctttgacctgtctggacaagcatgggag
gatgcgttcgaggagttcaaaagacttaaggctgcagctattgcagaaagaaaccgcgct
cgtgttgttggaggtctgccagatgtggtcactatccaggagggcaagtctcttaacctc
actggtaatgtatggggagatccggcacctgaggtgacctggttgaagaacgacagagag
ctggtgtctgatgagcattacactctgaagttcgagcacggcaagtttgccagcatcacc
atcgcagcagtgaacacagccgactctggcaaatacgcactgcaggtgaagaacaaatac
ggcacagaggcaatgccgttcaccgtcagcgtctacttcccagaagacgaggcagacagg
aagaaggtggaaaaaaagtaa
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