KEGG   Clupea harengus (Atlantic herring): 105900580
Entry
105900580         CDS       T09045                                 
Symbol
hltf
Name
(RefSeq) helicase-like transcription factor
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
char  Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:char00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:char04121]
    105900580 (hltf)
   03400 DNA repair and recombination proteins [BR:char03400]
    105900580 (hltf)
Enzymes [BR:char01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     105900580 (hltf)
Ubiquitin system [BR:char04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    105900580 (hltf)
DNA repair and recombination proteins [BR:char03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    105900580 (hltf)
SSDB
Motif
Pfam: SNF2-rel_dom HIRAN Helicase_C zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3 zf-RING_2 zf-RING_UBOX zf-RING_5 RING_XB3-XBAT31 zf-C3HC4_4 zf-ANAPC11 Prok-RING_4 zf-RING_11 zf-Nse zf-RING_6 HDA2-3 GCM
Other DBs
NCBI-GeneID: 105900580
NCBI-ProteinID: XP_031418878
Ensembl: ENSCHAG00000013843
UniProt: A0A6P8ERU7
LinkDB
Position
25:7677926..7687381
AA seq 935 aa
MQSNVRRFGGQGLTFIDFLNVDHTETITLSQAIRNSSEDVSAIQDLENEANVLFGNIQGT
VVGLRYYTGVVNRGEMVSLVREPQNPYDRNAVMVANVYGSQVGHMKKELAAAMAPIIDGN
LAKIEGVVPYGETNKFSMPVILSFWGKEENKNTVLNLLSRHSYKLGPGSGVKASQGPAAP
KRLNSIPLTTEQLKSAFDKLFDDLMEDKTREMEPAEAVHTPLLPHQKQALHWMTSRENSN
DLPPFWEQKSGLYVNVLTNFAVRERPDRVRGGILADDMGLGKTLTTIALIVSNFHNGKPL
PLEKSETSEAQSKALQSKRPHEETTTVKGVDAEQTGGETSVPKKKAKTTKKENASTSKGK
AVLIDDLGFAAAMGGFTSEGTSKKKKAKKKSSGVDSLPSESSGSSSARATLILCPLSVLS
NWLDQFEQHVRMDVKLNVYLYYGAERCRDSHFLAGQDVVLSTYNVLASDFGNKASSPLHK
VSWLRVVLDEGHIIRNPNALQSKAVLDLTSERRWILSGTPIQNSLKDLWMLLSFLRLKPF
DVKEWWNRVIQRPVTQGDSEGLQNLQALVKGITLRRTKTSKAGGRQVVELPERTVFVEHV
ALSEEERQEYDLAKMEGRNVIARYVKQGTVLTNYADVLAILVRLRQLCCHPGLLGSYAGA
GEPSTPSELRERLVSKIRLVLGCGSDEECAICLESLRQPVITYCAHVFCRPCICEVIRSE
QEHAKCPLCRAQIKTRELVEYPGDEEDSFSADSKDKWRSSSKVTALMSSLLALRSEDGSI
KSLVVSQFTRFLTLLEVPLREHGFTFTRLDGSMNQKNRAKAIQEFQDSSPGSPSIMLLSL
KAGGVGLNLTAASHVFLMDPAWNPAAEDQCVDRCHRLGQKRDVVITKFIVKDSVEENMVK
IQKKKQDLVEKAFGARTGQEKRQSRIEEIRALMEL
NT seq 2808 nt   +upstreamnt  +downstreamnt
atgcagtctaatgtcagacgatttggaggacaaggattaacctttatagatttcctgaat
gttgaccacacggagacaataacgctgtcccaggcaatacggaattcatcagaagatgta
tcagcaatccaagacctggaaaacgaagcaaatgtcctcttcgggaatattcaaggcacc
gtggtgggtctgcgatattacacaggggtggtcaacagaggagagatggtgtctctggtc
agagagcctcaaaatccatatgaccgaaatgcagtaatggtggcgaatgtgtatggaagc
caggtgggacatatgaaaaaagagcttgcagctgcaatggcccctatcattgatggcaac
ctggctaagattgaaggggtagtaccctatggagaaacaaataagttttcaatgccagtg
atactctccttctggggcaaagaggagaacaagaatactgtcttaaatctacttagtcgc
catagttacaagcttggccctggatcaggtgttaaggcatcccaaggacctgcagctccc
aagagactgaactccattcctttgacaactgaacagctgaagagtgcctttgacaaactg
tttgatgacctgatggaagacaagactcgagagatggagcctgctgaggcggttcatact
ccactgctcccccatcagaagcaggccctccactggatgacctcgcgggaaaacagcaac
gatttgccccccttctgggaacaaaagagtggcctgtacgtcaatgttctcaccaacttc
gccgtgagggaaaggcctgatcgagtccgcggtggcatcctggccgacgacatgggactg
gggaaaaccctcaccaccattgcactgattgtttccaatttccataatggaaaacccttg
cccctagagaagagtgaaacatcagaggcacagtcaaaggcattgcaatcgaaaagacca
catgaagaaaccaccactgttaaaggcgttgatgcagagcaaactggaggggagacgagt
gttccaaagaagaaggccaagacaaccaagaaagaaaatgcttccaccagcaaaggcaaa
gctgttttaatagatgatctgggctttgcggcagcaatgggaggcttcacctcggaaggc
acctccaagaagaaaaaagcaaagaagaagagctcaggggtcgacagcctgccatcagag
agcagtggcagctccagtgccagagcaacgctgatcctttgtcccctgtctgtgctcagc
aactggctggaccagtttgagcagcacgtgcgaatggatgtgaagctgaatgtgtacctg
tactatggtgctgaacgctgccgtgactcacacttcctggctggacaggatgtggttctc
tccacctataacgttctggcttcagactttggtaacaaggccagcagccctcttcacaag
gtgagctggttacgggtggtgctggacgagggtcacatcatcagaaaccccaacgccctc
cagagcaaggctgtactggacctcacctcagagaggagatggatcctgtcaggcaccccc
atccagaactccctgaaagacctgtggatgctcctgtccttcctgaggctgaagccgttc
gatgtgaaggagtggtggaaccgtgtcatccagaggcccgtcacacaaggagacagtgag
gggctgcagaacctgcaggcgctggttaaggggatcaccttgcggcgcaccaaaaccagc
aaagcagggggcaggcaagtggtggagctgccggagaggacggtgttcgtcgagcacgtg
gccctgtctgaggaggagaggcaggagtacgacctcgccaagatggagggcaggaacgtc
atcgcacggtatgtcaaacaaggaaccgtcctgactaactatgcagatgtgttggccatt
ctggttcgactgcggcagctctgttgtcatcctgggctgctggggtcttacgccggagca
ggcgagccgtccacgcccagtgagctacgtgagcgcctcgtcagcaagatcaggctggtg
ttgggctgtggctcggacgaggagtgcgccatctgcctggagtcactgcggcagcccgtc
atcacctactgcgcccacgtcttctgccgcccctgcatctgcgaggtcatccgctctgag
caggagcatgccaagtgtccactatgccgagcccagatcaagacccgggagctggtagag
tacccaggagatgaggaggactctttctcggccgatagcaaagacaagtggaggtccagc
tcaaaggtgacggccctgatgagcagtctgttggccctgcgcagtgaagacggcagcatc
aaaagcctggtggtgtcacagttcaccaggtttctcaccctgctggaggtgcctctgagg
gagcacggttttactttcacacgactggatggctccatgaaccagaagaaccgagccaag
gccatccaggagtttcaggattcctctcccggcagcccctcgatcatgctgctgtcactc
aaggctggcggcgtgggcctcaacctgaccgctgcctctcacgtcttcttaatggatcca
gcttggaacccggcagcagaggaccaatgtgttgacaggtgtcaccggcttggccagaag
agggatgttgtcatcaccaagttcattgtgaaggactctgtggaggagaacatggtgaag
atccagaagaagaagcaggacctggtggagaaggcatttggtgccagaaccggccaggag
aagaggcagtcacgcatagaggaaatcagggccctgatggagttgtga

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