KEGG   Clupea harengus (Atlantic herring): 105900610
Entry
105900610         CDS       T09045                                 
Symbol
rpp40
Name
(RefSeq) ribonuclease P protein subunit p40 isoform X2
  KO
K14530  ribonucleases P/MRP protein subunit RPP40 [EC:3.1.26.5]
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:char00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    105900610 (rpp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:char03009]
    105900610 (rpp40)
   03016 Transfer RNA biogenesis [BR:char03016]
    105900610 (rpp40)
   03029 Mitochondrial biogenesis [BR:char03029]
    105900610 (rpp40)
Enzymes [BR:char01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.5  ribonuclease P
     105900610 (rpp40)
Ribosome biogenesis [BR:char03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    RNase MRP
     105900610 (rpp40)
Transfer RNA biogenesis [BR:char03016]
 Eukaryotic type
  5'processing factors
   Ribonucrease P
    105900610 (rpp40)
Mitochondrial biogenesis [BR:char03029]
 Mitochondrial DNA transcription, translation, and replication factors
  Mitochondrial transcription and translation factors
   RNase MRP
    105900610 (rpp40)
SSDB
Motif
Pfam: Ribonuc_P_40
Other DBs
NCBI-GeneID: 105900610
NCBI-ProteinID: XP_012683404
Ensembl: ENSCHAG00000026578
UniProt: A0A6P3VWW8
LinkDB
Position
25:8533104..8538656
AA seq 361 aa
MSPELEKCSRSLLVCEKSNFTKEKSRYDIHVSKHYFNYKVSIVIPECASLPASIAGVINS
FNSYYRVRDLPIYKLLEEEFLEKVVKKGQFYALSYNTRIDEDNTIAFLPSGQLILSVDKD
TYEQLGLEGKPSQYKHRKVLRYVVTIDLTDKLMSPGAKRYQRLITSLKEWVPIKCDLMIS
SKMTAEEDGGVLQNLLSQYSFEEHRPTLHTHTLKEMPCPSLHSTDRHGDEKSCDPHHFLE
WLGAVSMDISSDNEASSFLSTYVCPDPQSLMSHGLLCTVTGFLIPEDIYSLLLELRRYFD
EPKFTSWLSMTVHGFVDSPVSWGTTEHGFLKSGENFYNFVCFRNQDYWLHMATGSHDGCP
P
NT seq 1086 nt   +upstreamnt  +downstreamnt
atgtcccccgaactggaaaagtgctccaggagtttgcttgtatgcgaaaagtccaatttc
acgaaagagaaatctcgatatgatatccacgtgtcgaaacactacttcaattacaaggtg
tctatagtaatccccgaatgtgcttcattaccagcgagcattgcgggagtcatcaatagt
ttcaactcctattaccgtgttcgtgacctaccaatatataaacttcttgaggaagagttt
cttgagaaagtcgtgaaaaaaggtcaattttatgcactttcctacaataccagaattgac
gaggataacaccatagcatttcttccaagtgggcagttgattctgtctgtcgataaggat
acctatgagcagctgggtttagagggaaaaccatcgcagtacaaacacagaaaggtgctg
agatatgttgtgactatagacttgacagacaagttgatgagtccaggtgccaagcgatac
cagaggctaataacaagtctgaaagaatgggtgccaattaaatgcgacttaatgatttcc
agcaaaatgacagctgaggaggatggtggagtgctgcagaatctcctctcccaatatagt
tttgaagagcataggcctaccctgcacacacataccctgaaggaaatgccctgcccttct
ctacactccactgatcgccatggagatgagaagtcatgtgacccccatcatttcctggag
tggctgggggcagtcagtatggacatcagtagtgacaacgaggcgtccagctttctttca
acatatgtctgccccgaccctcagagcttaatgagtcatgggttgctgtgcacagtcact
gggttcctgattcctgaagacatatactcacttcttctggagctcaggcgctattttgat
gagccaaagttcacctcctggctgtccatgactgtgcatggctttgtggacagtccagtc
tcctggggaaccacagaacatgggttccttaagagtggagagaatttctacaactttgtg
tgcttcaggaatcaggactattggttgcacatggccacaggctcccatgatggttgccca
ccctag

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