Clupea harengus (Atlantic herring): 105900883
Help
Entry
105900883 CDS
T09045
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X2
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03013
Nucleocytoplasmic transport
char03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105900883
03015 mRNA surveillance pathway
105900883
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105900883
Enzymes [BR:
char01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105900883
5.6.2.5 RNA 5'-3' helicase
105900883
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105900883
mRNA cycle factors
Common to processing body (P body) and stress granule
105900883
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
NPHP3_N
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
UvrD_C_2
SRP54
AAA_22
Motif
Other DBs
NCBI-GeneID:
105900883
NCBI-ProteinID:
XP_012683711
Ensembl:
ENSCHAG00000018486
UniProt:
A0A6P3VX86
LinkDB
All DBs
Position
10:complement(20037201..20053631)
Genome browser
AA seq
1101 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEYEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDEVLQNGPLDDSVAKTSQLLAELNFEEDEEDAYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQIAA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPIEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVLIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATVVYHLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLCAKSREAIDSPVSF
LALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICGTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAGDRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGARFMTTAMYDAREALIPGSAYDRSNTGRPNIYFQTHDQIGMIGAGPNHVAAM
NMPIPFNLMMPHMPPPGYLGQASGPALGRGGLNKGRGGRGGRQKPRGAANHGSGQGNIGN
SQASQDAASQPFSQGPLTQGYIAMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQ
DSTYQGERAYQHGGVTGLSQY
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaagcgtatgggccgagttctcagactctaaccttcctggataccgaggaa
actgagttgcttggagctgatacccaaggctctgagtatgaattcactgattttacactt
cctagtcaaacgcaaactcaaggccagacccaaagtcagctggataatcaggtaaatggc
cccgacgaagttttacaaaacggaccacttgatgattctgttgctaaaacaagtcaactt
ttagcggaactgaactttgaggaagatgaggaggatgcctattacaccaaagacctacca
gtgcatgcctgcagctactgtggcattcatgatccagcatgtgtggtgtactgcaacaca
agcaagaagtggttctgcaatgggcgaggcaacacctctgggagccacattgtgaaccac
ctggtgagagccaagtgcaaggaggtgactcttcacaaggatgggcccctgggagagact
gtgttggagtgctacaactgtggctgtcgcaatgtgttcctcctgggcttcatccctgcc
aaggctgactcggtggtcgtactgctgtgcaggcagccgtgtgcgagtcagagcagcctg
aaggacatcaactgggacagctctcagtggcagccacttatccaggaccgctgcttcctg
tcctggcttgtgaagatcccctccgaacaggagcagctccgggcacgccagatcgctgcc
cagcagatcaacaagcttgaggagctctggaaggacaatcccactgcaaccctggaggac
cttgagaagcctggtgtggacgaggagcctcagcacgtgctgctacgctatgaggatgcc
taccagtaccagaacatctttgggcctctggtcaagctggaggccgactatgacaaaaag
ctcaaagagtcccagacccaagacaatataactgtcaggtgggacctgggactgaataaa
aaacggattgcttatttctcattacccaagacggactcaggtgatatgaggctgatgcag
ggagatgagatctgtctccggtataaaggtgatctggctccactttggaaagggattgga
catgtcatcaaagtaccagacaattatggagatgagatcgcaattgaattgcgaagcagc
gttggagcgcccattgaagtcacacacaacttccaggtcgattttgtgtggaagtccacc
tcctttgatcgaatgcagagtgccctaaagacctttgccgtggatgagacctccgtgtct
gggtacatataccacaagcttctgggccacgaggtggaggacgtcctcatcaagtgtcag
cttcccaagcgtttcactgcccagggtcttcctgaccttaaccactctcaggtgtatgcg
gtgaagactgttctccagcgtcctctcagcctcattcagggtccgcctgggacgggtaaa
acggtcacctcggcaaccgtagtgtatcacctggccagacagggcaatgggcctgtgctg
gtgtgcgctcccagtaacatagctgtggaccaactgacggagaagatccacatgtcgggg
ctgaaggtggtgaggctgtgtgccaagagcagagaggccatcgactcgcccgtctccttc
ctggctctgcacaaccagatccgcaacatggacagcatgccagagctccagaagctgcag
cagctgaaggacgagaccggagagctgtcctccgcggacgagaagcgctacagggctctg
aagcgcaccgctgagcgagagctcctcatgaatgcggatgtgatctgcggcacgtgtgtt
ggtgctggggaccctcggctggctaagatgcagttccgctccatcctcatcgacgagagc
acccaggccacggagcccgagtgcatggtgcccgtggtgcttggggccaagcagctgatc
ctggtgggagaccactgtcagctggggccggtggtgatgtgtaagaaggcggccaaggcg
ggcctgtcccagtctctgtttgagcggctggtggttctgggcatcaggcccatccgcctg
caggtgcagtaccgcatgcaccccgccctcagtgccttcccctccaacatcttctacgag
ggctcgctgcagaacggagtcaccgcaggtgaccgcattaagaaaggctttgacttccag
tggcctcagccggacaagcccatgttcttctacgtgacccagggccaggaggagatcgcc
agctccggcacctcctacctcaacaggaccgaggcgtctaacgtggagaagatcaccacg
cggctcctgaaggccggcgcaaagccggatcagatcggcattatcacaccctacgagggc
cagaggtcttacctggtgcagtacatgcagttcagtggctccctgcacactaagctctac
caggaagtggagattgccagtgtggacgccttccagggccgtgagaaggacttcatcatt
ctgtcctgtgtgcgtgcgaatgagcaccagggcattggtttcctcaacgatccacggcgt
ctcaacgtggctctcaccagagcaaggtacggcgtgatcatcgtgggcaaccccaaggcc
ctgtccaagcagccgctgtggaaccacctgctgaactactacaaggagcagaaggtgctg
gtggaggggcccctgaacaacctccgggagagcctcatgcagttcagcaagccccgcaag
ctggtcaacaccatcaaccccggtgcccgcttcatgaccacggccatgtatgacgccaga
gaggccctgatccccggctctgcgtacgaccgcagcaacacaggccgtccaaacatttac
ttccagacccatgatcagattggcatgatcggtgctggccctaaccacgtggcagccatg
aacatgcccatccccttcaacctgatgatgccacacatgcccccgccaggctacctgggc
caggccagtggccctgctcttgggcgtggaggccttaataaaggcagaggaggtcgcggt
gggcgtcagaagccccgtggcgctgccaaccatggcagtgggcaaggtaacattggcaac
agccaggccagccaggatgcagcgtctcagccattctcccagggcccgctcacccagggc
tacatcgccatgagccagccctcacagatgagccagcccggcctctcccagcctgagctg
tcccaggacagttacttgggggatgagttcaagtctcagatcgatgtggctctgtctcaa
gactcaacataccagggtgaacgtgcataccaacatggtggagtaactggactgtcacag
tattaa
DBGET
integrated database retrieval system
