KEGG   Clupea harengus (Atlantic herring): 105900886
Entry
105900886         CDS       T09045                                 
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char03018  RNA degradation
char03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:char00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105900886 (lsm4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    105900886 (lsm4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:char03019]
    105900886 (lsm4)
   03041 Spliceosome [BR:char03041]
    105900886 (lsm4)
Messenger RNA biogenesis [BR:char03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     105900886 (lsm4)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     105900886 (lsm4)
Spliceosome [BR:char03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    105900886 (lsm4)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 105900886
NCBI-ProteinID: XP_012683716
Ensembl: ENSCHAG00000018941
UniProt: A0A6P3VZ22
LinkDB
Position
10:20053692..20057218
AA seq 144 aa
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGMQQNKQQGKGRGGGAGRGVFGGRGRGMG
PGAGRGQQQQEKKPGKPQGVKNQH
NT seq 435 nt   +upstreamnt  +downstreamnt
atgttacccctgtctttgttgaagactgcacagaaccacccaatgttggtggagttgaag
aatggagagacttacaatggccacttggttagctgtgacaactggatgaacataaaccta
agagaagtcatctgcacgtccagggatggtgacaagttttggaggatgccagagtgctac
atccggggcagcaccatcaagtacctgcgtatcccagacgagatcatcgacatggtgaag
gaggaggtggtgtccaagggccgcgggcgcgggggcatgcagcagaacaagcagcagggc
aagggccgaggaggcggtgcaggaagaggagtgtttggtggccgtggcaggggcatgggg
cctggagcaggacgcgggcaacagcagcaggagaagaagcctggcaaacctcagggggtg
aagaaccagcactga

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