Clupea harengus (Atlantic herring): 105900909
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Entry
105900909 CDS
T09045
Symbol
snx1a
Name
(RefSeq) sorting nexin-1a isoform X1
KO
K17917
sorting nexin-1/2
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
105900909 (snx1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105900909 (snx1a)
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
char04990
]
105900909 (snx1a)
Membrane trafficking [BR:
char04131
]
Endocytosis
Macropinocytosis
Sorting nexins
105900909 (snx1a)
Domain-containing proteins not elsewhere classified [BR:
char04990
]
Phox homology (PX) domain-containing proteins
Sorting nexins
105900909 (snx1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps5
PX
BAR_3_WASP_bdg
Sorting_nexin
XdhC_C
Motif
Other DBs
NCBI-GeneID:
105900909
NCBI-ProteinID:
XP_031419741
Ensembl:
ENSCHAG00000023489
UniProt:
A0A6P8F6J3
LinkDB
All DBs
Position
3:complement(547378..574828)
Genome browser
AA seq
1011 aa
AA seq
DB search
MATSSERTPPPFPETEDMDVDTEIEDLESNESEYTLEDGIGPETDANNVPDDIFSGSPTG
NVSNPIMDSVIKSDTDAINELDEQPFDTAPKEEPNEAPDNNSFWTPLGTDVSKPEDGGKN
PLMDPGESDMCTPDQSSAEDFLSESVAKPLAEWELETDSDPTNELTREAENDLIGEPVSD
CEDIPVVDISHESVSVVSEPLFKEPLSEVTEPPVCDDDVSELLSEPVSVVSEPLFKEPLS
DVTEPPVCDDDFSELLSEPVSDCEDIPVVDVISHESVSVVSEPLFKEPLSDVTEPPVCDD
FSELLSEPVSVVSEPLFKEPLSDVTEPPVCDDDFSELLSEPASDCKDIPVVDVIHESVSV
DSVIKSDTDAINELDEQPIDTAPKEEPNKAPDNNSFWTPLSTDVTEPPVCDDFSELLSEP
VSVVSEPLFKEPLSDVTEPPVCDDVSELLSEPVSVVSEPLFKEPLSDVTEPPVCDDDFSE
LLSEPASKQHKALFSDPPDDIFSEMLNCKDKQQSSVFSAASVDMLCLEAENAPITGPLSD
DTKHPPSECVMRPTSPAANPDSSSDSRPRDEEEEQDIFAEATVELSLDSPAIARKRVEPS
RLLTPASSTSASSNISKQQPKMLEELEEEDKFELNVSVTNPEKVGEGMNAYMAYRVSTQT
TLPMFKRKAFEVRRRFSDFLGMYEKLSEKLSQNGYIVPPPPEKSFLGMTKMKVGKEDPSS
VEFVEKRRAALERFLQKVLCHPTLLQDPDVREFLEREELPRAVNTQTFSGAGFLKIINRA
TEAVSKMTIKMNESDVWFEEKLQEVEGEDQQLRKLHAMVDSLVNHRKDLSAHTAMFAKSI
GMLGSSEDNTALSRALCQLAEVEDKIEQLHQEQAGNDFFIFAELLADYIRLLGAVRGCFD
QRMKMWQRWQEAQNMLQKKREVEAKLLWANKPEKLQLAKDEITEWEAKVTQYERDFERIS
ATVRKEVIRFEKEKAKDFKKQTLKYLQVLVNSQQQLIKYWEAFLPEAKAIA
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccagttctgaacgcacacctccgccttttcctgaaacagaggacatggatgta
gacacagaaatagaagacttggagagcaacgaaagcgaatatactctggaggatggaatt
gggccggagacggacgccaacaatgttccagatgacatattttctggatcgccaactggc
aatgtcagtaatcctataatggattcggtaatcaagtcagacactgatgccatcaacgaa
ctggatgaacaaccttttgacacggcaccaaaggaagaaccaaacgaggcacctgataac
aacagtttctggacaccgctcggtacagatgtgagcaaaccagaagacggtggcaaaaat
cccctcatggaccccggggaatctgacatgtgtactcctgatcagtcatctgctgaggat
ttcctctccgagtccgtcgccaagccattggctgaatgggaactcgagacagacagtgac
ccaactaacgaattaactcgagaggccgagaacgacctaattggtgaacctgttagtgac
tgcgaagacataccagtggtagatatctcccatgagtcggtgagtgttgttagtgaacct
ttgttcaaggaaccactttcagaagtcacagaaccgcctgtttgtgacgacgacgtttca
gagttgttgagtgaacctgtgagtgttgttagtgaacctttgttcaaggaaccgctttca
gatgtcacagaaccgcctgtttgtgacgacgacttttcagagttgttgagtgaacctgtt
agtgactgcgaagacataccagtggtagatgtcatctcccatgagtcagtgagtgttgtt
agtgaacctttgttcaaggaaccactttcagatgtcacagaaccgcctgtttgtgacgac
ttttcagagttgttgagtgaacctgtgagtgttgttagtgaacctttgttcaaggaacca
ctttcagatgtcacagaaccgcctgtttgtgacgacgacttttcagagttgttgagtgaa
cctgctagtgactgcaaagacataccagtggtagatgtcatccatgagtcagtgagtgtt
gattccgtaatcaagtcagacactgatgctatcaacgaactggatgaacaacctattgac
acggcaccaaaggaagaaccaaacaaggcacctgataacaacagtttctggacgccgctc
agtacagatgtcacagaaccgcctgtttgtgacgacttttcagagttgttgagtgaacct
gtgagtgttgttagtgaacctttgttcaaggaaccactttcagatgtcacagaaccgcct
gtttgtgacgacgtttcagagttgttgagtgaacctgtgagtgttgttagtgaacctttg
ttcaaggaaccactttcagatgtcacagaaccgcctgtttgtgacgacgacttttcagag
ttgttgagtgaacctgctagcaaacaacacaaagccctcttcagcgaccctcccgatgac
attttcagtgagatgctcaattgcaaagacaagcaacagagctctgtcttcagcgccgcc
tcagtagacatgttgtgtctagaagctgaaaacgcccccatcactggacccctgagtgat
gacacgaaacatcctccatctgagtgtgtgatgagaccaacaagtccagctgcaaaccct
gactcgagttctgacagtcgtcccagagatgaggaggaggagcaagatatatttgcagag
gccactgttgaattatcactggacagtccggcaattgcgagaaagagagtggaaccttcc
aggctcttaacaccggcttcttccacctctgcttcctcaaacatctccaaacaacagccc
aaaatgttggaagagctcgaggaagaggacaagtttgagctgaacgtgtcggtgactaac
ccagagaaagttggtgaaggtatgaatgcctatatggcctacagggtatccacacagact
acactacccatgtttaagaggaaggcctttgaagtgagaaggcgcttcagtgatttcctc
gggatgtacgagaagctctctgagaaactctcccagaatggttatatcgtacccccaccg
ccagagaaaagctttctggggatgacaaaaatgaaagtagggaaggaagacccctcatct
gtggagtttgttgagaagaggagagccgctctggagaggtttctccaaaaggttttgtgt
caccctacattgttgcaggacccagacgtaagagaatttctggaaagagaggagttgccc
agggcagtgaacacccagacattcagcggcgcgggcttcctgaagatcatcaacagggcc
accgaggctgtcagcaaaatgaccataaagatgaacgagtccgatgtatggtttgaggag
aaacttcaggaggtggagggggaggaccagcagctaagaaaacttcatgccatggtggat
tcacttgtcaatcacagaaaggacttgtcggcccatacggcgatgtttgccaagagtatc
gggatgctgggcagctccgaggacaacacagctctgtcccgtgcgctctgtcagctggcc
gaggtggaggacaagattgaacagttgcaccaggagcaggctgggaatgatttcttcatc
ttcgcagagttgctagctgattacatccgtctgctgggagcagttagggggtgttttgac
cagcgtatgaagatgtggcagcgttggcaggaggctcaaaacatgcttcagaagaaacgt
gaagttgaggccaagctgctctgggccaacaagccagagaaactgcagctagctaaggat
gaaattacagagtgggaggcaaaggtgacgcagtatgagagagactttgaaaggatttca
gcaactgttcgaaaagaagtgattcggtttgagaaggaaaaggcgaaggatttcaaaaaa
cagacgctaaaatacctgcaggtgttagtaaattcacagcaacagttgattaaatactgg
gaggcattcttaccagaagccaaggccattgcttaa
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