KEGG   Clupea harengus (Atlantic herring): 105900975
Entry
105900975         CDS       T09045                                 
Symbol
lsm7
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char03018  RNA degradation
char03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:char00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105900975 (lsm7)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    105900975 (lsm7)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:char03019]
    105900975 (lsm7)
   03041 Spliceosome [BR:char03041]
    105900975 (lsm7)
Messenger RNA biogenesis [BR:char03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     105900975 (lsm7)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     105900975 (lsm7)
Spliceosome [BR:char03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    105900975 (lsm7)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 105900975
NCBI-ProteinID: XP_012683813
Ensembl: ENSCHAG00000016232
UniProt: A0A6P3VXF4
LinkDB
Position
10:complement(7083866..7085365)
AA seq 103 aa
MADKEKKKKESIFDLTKYIDKPIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDD
QYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDG
NT seq 312 nt   +upstreamnt  +downstreamnt
atggcggacaaagagaagaagaagaaagaaagtatattcgacctgacgaaatacatcgat
aagcccatcagagtgaaattccaaggtggacgagaagcaagtggtgtcttgaaaggcttc
gaccctttgttaaacctcgtattggatggcactatcgaatacatgcgcgaccctgatgac
cagtacaaactaactgaagacactcggcagctggggttagtggtgtgtcgagggacctcg
gtcgtgctcatctgtcctcaggatggcatggaggccattccaaaccctttcattcaacaa
caggatggctag

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