Clupea harengus (Atlantic herring): 105900977
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Entry
105900977 CDS
T09045
Symbol
arhgef18b
Name
(RefSeq) rho guanine nucleotide exchange factor 18 isoform X1
KO
K21066
A-kinase anchor protein 18
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
105900977 (arhgef18b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105900977 (arhgef18b)
Membrane trafficking [BR:
char04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
105900977 (arhgef18b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PH_16
RhoGEF
PH
C1_1
PH_13
SOS1_NGEF_PH
FAM133
Motif
Other DBs
NCBI-GeneID:
105900977
NCBI-ProteinID:
XP_031431014
UniProt:
A0A6P8FWE9
LinkDB
All DBs
Position
10:7011226..7045369
Genome browser
AA seq
1580 aa
AA seq
DB search
MADSPLNNSWPSFSKLWMKRWSFKRGSEGKPCSPPATLGSGTESSSSLSPASIADDVFFS
SLTEEQSPSSTESDYENPGQDVDSSAEDLLNLNSSLRGSEFFRDLQPEPITSQTPPTAVS
IVITPVGEHSLSPTLHVYQIVDKGSYQGPVASNYSQLPWQFSSSMENQQSDSEQPTVTVN
TTVQLGDPGDPEAQEALEAPEGPEAPELHDSDPDNIPMLVRSMSTSRRHSCGLPVSPIDL
GRRLSLDASGIDSDEDREGSILSRSTRHQVFAYPDCSEDQVGNDSAFQQDEPDRAGRTPC
AKSDMLASDERSKAARVSRILETSSQAAKDSGEEQDLEERLQSAEGQSHVLMVQKVLQEL
KQYHGAKYMSRGPCERAPGCTWYEFLSNEPEEEEDKTEKTEKGTKVKRTLSSLRNRMTGS
FNKEKGKHREKEKEQQKEKEKEREEKERDRGRRRSTSGHQLVPGSFSMCATCSLCSKTLQ
RKHGLQCLNCAVNVHKSCKSLLAECNSSKHKSRDSVKTSGSAQIAIRDQYSAPTHQPTQQ
HHTHPWVADGSCRPPRAPGMTITPRGQSATASNSSLSHCSSSGSLPGEMDETDAGRIKRF
AEDTVSLAPSTTESIIVDDAYYAAVRGDLEADAQDFELESWSLAVDQQYLKTHSKEAIKR
QDVMYELIQTEVHHVRTLKTMLRVYMHELHDSLHSQDRRLFPRLEELQDLHVNFLSRLKE
RCSQSLQPGSDRNYTIPRLGDILVSQFSGETGEKMKEYYGDFCSHHSEAVSFYKEQLQSN
KKFQNQIRKIANLSIVRRLGVPECILLVTQRITKYPVLVERILHNTEAGTEDQEELTRAL
GLIKEVITQVDTNVNDYEKASRLRDIAAKLEPKSHGKIKDGRVFRREDLCQGRRKLLHEG
TVNWKAASGRLKDILAVLLTDALLLIQEKDQRLVFSTVDNKPSVISLQKLIVREVAHEEK
AMFLICASSKEPEMYEIHTNSKEERNTWMTHIRQAVESCPTTEERLFSEEEEARAARFKE
FQDRLSAKDSQISQILTEKLELFADMAASVGGAEDVVSRSRLLLRGDTSDLQQGEQLLKG
AITEVENLQNLVLSSVRDPAPRPEESQGSGVLPRRAGTFGGYDSSRSILQKNGGVKKGAG
GLKSRERSQRASSDPLLKELCGSQGLEELPPPPQVDGSSPASWNPSWASSFPEAEQFLNK
VLQLSQRLYSLQSIVAQQDSHLELQRASLSERERPGGGRHRLGNVLLEQEKQRNLEKQRE
ELANFHKLQLQHRQEQARWERERDRHRRQAEAAEGRLQRREDECRRVEVSLGAEREELEH
QRQKYQEDLTRLRESTRTVEREKERLEQQKKLTLKKHNTLPTALISGMFAGQETGQHIPL
SSSFNGELLLAQGPTVDPTLPPKTLLRSSMSISPADFPERPEVKQQQQQAAAGGKSSEVP
IHLISTTNQLHKLGGVQQQIPTKLAAFSKGKEKTSRLKGSHRTESLASLDMKQMLPLKLS
AREDSSLRIKRSTSPSPSQQIHIQPPEPVNPPEVYYESPPPLTLHPSTTHRPPSHGPLHS
VPPPPYKITEDVTKEDVIFF
NT seq
4743 nt
NT seq
+upstream
nt +downstream
nt
atggcggactcccccttaaacaactcctggccctctttctccaagctctggatgaaacgg
tggtccttcaaaagagggtctgaaggtaaaccatgttccccacctgccaccctaggctca
gggactgagtcttcttcctccttgtctcctgcgtccattgcagatgatgttttcttcagt
agcttgactgaggagcagagtcccagctcaacagagagtgactatgagaaccctggacaa
gacgtggacagcagcgccgaggacctcctcaatctcaactcgtctctaagaggctccgag
ttcttcagagaccttcagcctgaacccataaccagccaaacacctcccacggccgtttcc
atcgtcatcacccccgttggcgagcacagtctcagcccaaccctgcacgtgtaccagata
gtagacaaaggctcttaccaaggccctgtggcatctaactacagccagcttccctggcag
tttagcagcagcatggagaaccagcaaagtgactcagagcagcccactgtcaccgtcaac
accacggtgcagctgggtgaccccggtgaccccgaggcccaagaggcccttgaagcccca
gagggcccggaggcccccgagctccacgactcagacccagacaacatccccatgctggtg
aggtccatgtccacatcacggaggcacagctgcgggttgccagtctccccaatagacttg
ggcagaagacttagtctggacgcctccggaatagacagtgatgaggatagagaaggatca
attctgtctcggtcaacacgccaccaggtttttgcttacccagactgctctgaggaccaa
gtgggaaatgactctgcatttcaacaagatgagcctgacagagctgggaggaccccatgt
gcaaagtctgatatgctggcatcagatgagaggtccaaggcagcacgtgtgtcccgaatc
ctggaaacttccagccaggctgccaaggattcaggagaggagcaggacttagaggaacgt
ctccagtctgcagaaggacaaagtcacgtgctgatggtacagaaagttctgcaagagctt
aagcagtaccatggtgccaagtacatgagtagaggcccctgtgagagagcgccaggatgc
acctggtatgaattcctctcaaacgaacctgaagaagaagaagacaagacagagaaaaca
gagaagggtacaaaggttaagcggaccctgagttcactgaggaaccgaatgaccggctcc
ttcaacaaagagaagggtaagcatcgtgagaaagagaaagagcagcagaaagagaaggag
aaagagagagaagagaaagagagggatagagggcgccgtagaagcactagtgggcaccag
cttgtgcctggctctttctccatgtgtgccacctgctcactgtgcagcaagactctgcag
aggaagcatggtctgcagtgtctgaactgtgctgtgaacgtccataagagctgcaagagt
ctgctggcagagtgcaacagcagtaaacacaagtccagggactctgtgaagaccagtgga
tctgcacaaatagccatcagggaccagtactccgcacccacgcaccagccgacgcagcag
caccacacgcacccctgggtcgccgatggctcctgccggcctccacgcgccccaggcatg
accatcacgccgcgaggacagagcgccaccgccagcaactcctccctcagccactgcagc
agctcaggatctcttccaggcgagatggatgaaacggatgcaggcaggattaagcgattc
gccgaggacacggtctccttggccccctccaccacagagtccatcatagtagacgatgcc
tactatgctgcggtgcgaggggacctggaagctgacgcgcaggacttcgagctggagtcc
tggagcctggccgtggatcagcagtatctcaagacacattccaaggaggccatcaaacgg
caggatgtcatgtatgagctgatccagaccgaggtgcaccacgtgcggacgctgaagacc
atgctgcgcgtttacatgcacgagctgcatgactcgctgcattcccaggaccgccgtctc
ttccctcgactggaagagctgcaggatctgcacgtgaacttcctgtcccgcctcaaggag
cgctgcagccaatcattgcagccaggcagtgacagaaactacaccataccaaggctggga
gacatcctcgtgtctcagttttccggtgagactggggagaagatgaaggagtactacgga
gatttctgcagtcatcacagtgaggccgtcagtttctacaaagagcagctgcagagcaac
aagaagttccagaaccagatacggaaaattgccaacttgtccattgttcgtcggctaggg
gtcccagagtgcatccttctggtcacgcagcgcatcactaagtacccagtgctggtggag
cgtattctgcataacactgaagcgggcacagaggatcaggaggagctgactcgggctctg
ggtttgataaaggaggtgatcacacaggtggacacgaacgtcaacgactacgagaaggca
tcgcggctgcgggacattgccgccaagctggagcccaagtcccacggcaagatcaaagat
gggcgcgtgttccgccgcgaggacctgtgccagggccgccgcaagctgctgcatgagggc
accgtcaactggaaggctgcctctgggaggcttaaagacattttggcagtcctgttgaca
gacgccctgttgctgatacaggagaaggaccagcgacttgtcttctccactgtggacaac
aagccgtcggtgatctcgctgcagaagctgatcgtgcgggaggtggcgcacgaggagaag
gccatgttcctcatctgcgcctcctccaaagagcccgagatgtacgagatccacaccaac
tccaaagaggagcgcaacacctggatgactcacatcagacaagcggtagagagttgccct
accacagaggagcgtctgttcagtgaggaagaggaggcccgagctgcccgattcaaagag
ttccaagaccggctgagtgctaaagactctcagatcagccagatcctgacggagaagctg
gagctgtttgcggacatggccgcgtcggtgggtggcgcagaggacgtggtctcgcgctcc
cgcctgctgctgcgcggcgatacctccgacctccagcagggggagcagttgctcaaggga
gccatcactgaagtggagaacctgcagaacctagtgctgtccagcgtgagagatcctgct
ccacggccggaagagagccagggctctggcgttctacccagaagggcaggcacatttggg
ggctatgacagcagccgctccatcctccagaagaatggtggtgtgaagaaaggtgctgga
ggcctgaagtccagagagaggagtcaaagggccagctctgaccccctgctcaaagagctc
tgtggcagccagggcctggaagagttgccccccccaccacaggttgatgggtcttctccc
gccagctggaacccatcgtgggcaagctcttttccagaggctgagcagttcctgaacaaa
gtgctccagctgtcccagaggctatacagtctgcagtcgattgtggcacagcaggacagc
cacctggagctgcagcgggcgtctctgagcgagcgcgagcgtcccggcggcgggcgccat
cgcctgggcaacgtgctcctggagcaggagaagcagcgcaacctggagaagcagcgcgag
gagctggccaacttccacaagctgcagctgcagcaccggcaggagcaggcgcgctgggag
cgcgagcgagaccgccaccggcggcaggccgaggcggccgaggggcgcctgcagcggcgc
gaggacgagtgccggcgggtggaggtgagcctgggcgcggagcgcgaggagctggagcac
cagcggcagaagtaccaggaggacctgacgcgcctccgcgagtccacacgcaccgtggag
agggagaaggagcggctggagcagcagaagaagctcaccctcaagaagcacaacacgctg
cccaccgcgctcatctcgggcatgttcgctggacaggagacggggcagcacatcccgctg
tcatccagctttaacggggagctcctgctggcccaggggccgacggtggaccccacgctc
ccacccaagaccctgttgcgctccagcatgtccatctcgccggccgacttccccgagcgg
cccgaggtgaagcagcagcagcagcaggcggcggcggggggcaagagctccgaggtgccc
atccacctgatcagcaccaccaaccagctgcacaagctgggcggcgtccagcagcagatc
cccaccaagctggccgccttcagcaagggcaaggagaagaccagcaggctcaagggctcg
caccgcactgagagcttagcctccttagacatgaagcagatgctccccctgaagctctcc
gcccgggaggacagctccctgagaatcaagcgctccaccagccccagccccagccagcag
atccacatccagccaccagaaccagtgaaccctccagaagtgtactatgagtccccgccc
ccactgaccctccaccccagcaccacacacagaccccccagtcacggcccactgcacagc
gtgcccccacccccttacaaaatcacggaggacgtcaccaaggaggacgtcatcttcttc
tga
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integrated database retrieval system
