Clupea harengus (Atlantic herring): 105901203
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Entry
105901203 CDS
T09045
Symbol
smarca2
Name
(RefSeq) probable global transcription activator SNF2L2
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
105901203 (smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
char03021
]
105901203 (smarca2)
03036 Chromosome and associated proteins [BR:
char03036
]
105901203 (smarca2)
Transcription machinery [BR:
char03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
105901203 (smarca2)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
105901203 (smarca2)
Chromatin remodeling factors
BAF complex
105901203 (smarca2)
PBAF complex
105901203 (smarca2)
GBAF(ncBAF) complex
105901203 (smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
BRK
HSA
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
105901203
NCBI-ProteinID:
XP_031426476
Ensembl:
ENSCHAG00000001539
UniProt:
A0A6P8FSI0
LinkDB
All DBs
Position
7:14313132..14348932
Genome browser
AA seq
1577 aa
AA seq
DB search
MSTPTDPSGGMSHPGPSPGPGLSPGPILGPSPGPGHSPGSVHSMMGPSPGPPSGPHSMQG
QGPGDYPQEGMHQLHKPMEGMLEKVAMGEEVHFGQMKNVGMRTLHSGMGPPQSPMDQHSQ
GYMSPHPSPMGVPEHAPSPMSSRGPTPPQMPPAPPVQMMPMDPQPGRGPSSFSPIQLQQL
RAQILAYKILGRGQPLPENLQLAVQGKRSLPTMQQPSVNTGPYSRPPGMPMPPISGPVPG
PCPAPAMQGHAQSPAPKPWPEGQGAGEPSTTPQKHPVPTPSGRPSPAPPTAQPQQQPLPH
QPPAQQQQPLQQQQQQQQQPGHPSLIIQLQQKQSRITPIQKPHGLDPVEILQEREYRLQA
RIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQDVVACMRRDTTLETALNS
KAYKRSKRQTLREARMTEKLEKQQKIELERKRRQKHQEYLNSILQHAKDFKEYHRSISGK
NQKLTKAVVTWHTNTEREQKKETERIEKERMKRLMEEDEEGYRKLIDQKKDKRLAYLLQQ
TDEYVANLTTLVYEHKAAQAARVKKKKRKKKKSPKLDENAEGLGAFGPDGEPMDESSQMS
ELPVKVIQTETGKVLQGTEAPKSSQLEAWLEMNPGYEVAPRSDSEESSSEYEEEDEDEST
SHLDLEEKKSKDPSGDAMFDSATKHIIDSVKQDVDDEYSAQAGENSSQSYYGVAHCVIER
VEKQSSLLINGTLKHYQIQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMELKR
LNGPYLIIVPLSTLSNWVYELDKWAPTIIKIGYKGTPSMRRNLVPLLRSGKFNVLLTTYE
YIIKDKHILAKIRWKYMIVDEGHRMKNHHCRLTQVLNTHYVAPRRLLLTGTPLQNKLPEL
WALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLK
KEVESQLPEKVEYVVKCDMSAIQKVLYRHMQGRGILLTDGSEKDKKGKGGAKTLMNTIMQ
LKKICNHPYMFPHIEESFAEHLGFPNGMINGLELYRASGKFELLDRILPKLLATNHRVLL
FCQMTTLMTIMEDYFAYRNFKYLRLDGATKSEDRAALLKRFNEPDSPFFIFLLSTRAGGL
GLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQKSEVRVLRLCTVNSVEEKILAAAKYK
LNVDQKVIQAGMFDQKSSGHERQVFLKAILTHEEQNEEEDEVPDDETLNQMIARIEDEFE
LFMRMDLDRRREDARNPKRKPRLMEEDELPSWILKDDAEVERLTCQEEEEKMFGRGSRSR
RDVDYSDALTEKQWLRAIEDGNLEEMEEEIRLKKRKRRRHSDKDGRREGSEKAKKKRGRP
PSEKLSPNPPKLTKQMTAIVDTVINYRDSSSRQLSEVFVQLPSRKELPEYYELIRKPVDF
KKIKERVRSHKYRSVSDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKE
EESEDDSDDDDEEEEESEAESKSVKVKIKLSKREERSHDKGKKRQSRGKAKPVVSDEDSE
DELEEKEQSEGSRSEDE
NT seq
4734 nt
NT seq
+upstream
nt +downstream
nt
atgtccacacccacggacccatctggaggaatgtcccaccctggtccatccccaggccca
ggcctatctcctggtcctatcctggggcccagccctggtccaggccactctcctgggtca
gtgcacagcatgatgggccccagcccagggcctcccagtgggcctcacagcatgcagggc
caggggcctggagattaccctcaggaaggcatgcatcagttgcataagcctatggagggg
atgctggagaaagtggcgatgggtgaggaggtgcactttggccagatgaagaatgtgggt
atgaggactctgcacagtggcatgggtccccctcagagccccatggatcagcacagccaa
gggtacatgtcccctcacccctcacccatgggtgtccccgagcacgcacccagccccatg
tccagcaggggacccacccctccccagatgcccccagcccccccggtccaaatgatgccc
atggacccgcagccgggccgtgggccatcctccttcagcccaatccagctacagcagctc
cgcgcccagatcctggcgtacaagatcctgggccgcgggcagccgctgccagagaacctg
cagctggctgtgcagggcaagaggagccttcccaccatgcagcaaccgtccgtcaacact
ggcccctacagccggccaccaggtatgccaatgcctcctatcagcggacctgtccctggg
ccatgccctgcgcctgccatgcaaggacacgctcaaagccccgcaccaaagccctggccg
gagggtcaaggtgctggtgaaccctccacaaccccccagaagcacccggtgcccaccccc
agcggccggccgtcccccgcgccgcccaccgcccagccgcagcagcagccactgccccac
cagccccccgcccagcagcagcaacctctccagcagcagcagcagcagcagcagcagcct
ggccacccctccctcatcatccagctgcagcagaagcagagccgcatcacgcccatccag
aagccccatggcctggaccctgttgagatcctgcaggagcgcgagtacagactgcaggcc
aggatcgctcaccgcatccaggagctggagaacctgcctggctccctgcctccagacctg
cgcaccaaagccacggtggagctcaaggccttaaggctgctcaacttccagcggcagctg
aggcaggacgtggtggcctgtatgcggcgggacaccacgctggagacagcgctcaactcc
aaggcctacaagcgcagcaagcggcagaccctgagggaggcgcgcatgaccgagaagctg
gagaagcagcagaaaattgagctggaaaggaagcgccgacagaagcaccaggaatatttg
aacagtatccttcaacatgccaaagacttcaaagagtaccacaggtccatttctggaaag
aaccagaagcttaccaaggccgttgtcacgtggcacaccaacacggagcgtgagcagaag
aaggagacggaacggatcgagaaagagaggatgaagaggctgatggaggaggatgaggag
ggctaccggaagctgattgaccagaagaaggacaagcgtctggcctacctgctgcagcag
acggacgagtacgtggccaacctcaccaccctggtgtacgagcacaaggccgcccaggcc
gccagggtgaagaaaaagaagaggaagaagaagaagtcaccgaaattggatgagaacgct
gaaggacttggagcctttgggcctgatggagagcccatggacgagagcagtcagatgagt
gagctgccagtcaaggtgatccagacggagacgggcaaagtgctgcagggcaccgaggcc
cccaagtccagtcagctggaggcctggctggagatgaacccaggctatgaagtggcccca
cggtccgacagcgaggagagcagctccgagtatgaggaggaggacgaggacgagtccacg
tcacacctggacttggaggagaagaagtccaaggaccccagcggagacgcgatgttcgac
agtgccaccaagcacatcatcgattcggtaaagcaggacgtggatgacgagtacagcgct
caggctggtgaaaacagttctcagtcctactacggcgtggcccattgcgtcatcgagagg
gtggagaagcagtcctccctgctgatcaacggcaccctgaagcattaccagatccagggc
ctcgagtggatggtgtcgctgtacaacaacaacctgaacggcatcctggccgacgagatg
ggcctgggcaagaccatccagaccatcgccctcatcacctacctgatggagttaaagagg
ctcaacgggccctacctgatcatcgtgcccctctcaactctctccaactgggtgtatgag
ctcgacaagtgggcaccaaccattatcaaaatcggatacaagggcacgccctccatgcgt
cgaaacctggtgcctctgctgcgcagcggcaagttcaacgtgctcctgaccacctacgag
tacatcatcaaggacaagcacatcctggccaagatccgctggaagtacatgattgtggac
gaaggtcaccgcatgaagaaccaccactgcaggctgacgcaggtgctgaacacacactac
gtggccccacggcgtctcctgctcaccgggacgccgctgcagaacaagctgcccgagctc
tgggccctgctcaacttcctcctgcccaccatcttcaagagctgcagcaccttcgagcag
tggttcaacgcacccttcgccatgaccggagagagagtggacctgaatgaagaggagacc
attctgatcattcgccgtctgcacaaggtactccgccccttcctgctgcgtcgcctgaag
aaggaggtggagtctcagcttccagagaaggtggagtacgtcgtcaaatgtgacatgtcg
gccatccagaaggttctgtaccggcacatgcagggcaggggcatcctgctgactgacggc
tcagagaaggacaagaagggtaaaggaggagcgaagaccttgatgaacaccatcatgcaa
ctgaagaagatctgcaatcatccttacatgttcccgcacatcgaggaatcgtttgcggag
cacttgggttttccgaatggcatgatcaatggccttgagctgtaccgtgcgtccggtaag
tttgagttgctggaccgcatcctgcccaagctgctggccacgaaccaccgcgtgctgctc
ttctgccagatgaccaccctcatgaccatcatggaggactactttgcctaccgcaacttc
aagtacctgcgcctggacggtgccaccaagtcggaggaccgcgcagcgctgctgaagagg
ttcaacgagcccgactcgccgttcttcatcttcctgctgagcacacgcgccgggggcctg
gggctcaacctgcaggcggccgacaccgtggtgatcttcgacagcgactggaacccccac
caggacttacaggcgcaggaccgcgctcaccgcatcgggcagaagagcgaggtgcgcgtg
ctgcgcctttgcaccgtcaacagcgtggaggagaagatcctggctgccgccaagtacaag
ctcaacgtggaccagaaggtcatccaggccggcatgttcgaccagaagtcgtccggccac
gaacggcaggttttcctgaaggccatcctgacgcacgaggagcagaacgaggaggaagac
gaggtcccagatgacgagaccctgaaccagatgattgccaggatcgaggacgagtttgag
ctcttcatgcgcatggacctggaccggcggcgcgaggacgcccgcaaccccaagcgcaag
cctcgtctgatggaggaggacgagctgccatcctggatcctgaaggacgacgccgaggtg
gagcggctcacctgccaggaggaggaggagaagatgttcggccgcggctcgcgcagccgg
cgcgacgtggactacagcgacgcgctcacagagaagcagtggctgagggcgatcgaggac
gggaacctggaggagatggaggaggagatccgcctgaagaagcgcaagcggaggcggcac
agcgacaaggacggccggcgcgagggcagcgagaaggccaagaagaaacggggccgaccg
ccgtcggagaaactctcgcccaaccccccgaaactcaccaagcagatgaccgccatcgtg
gacacggtcatcaactacagggacagctctagcaggcagctcagcgaggtctttgtgcag
ctgccctcgcgtaaggagctcccagagtattacgagctgataaggaaacctgtggacttc
aaaaagatcaaggagcgcgtgcgcagtcacaagtacaggagcgtgagcgacctggagaag
gacgtcatgcttctctgtcacaacgcccagactttcaacctggagggctcacagatctac
gaggactccatcgtgcttcagtcggtgtttaagagtgccaggcagaagattgcgaaggag
gaggagagcgaagacgacagtgatgacgatgacgaggaggaggaggagtccgaggctgag
tccaagtcagtgaaagtgaagatcaagctgagcaaaagagaggagcgcagtcacgacaaa
ggcaagaagaggcagagccgtggcaaggccaagcctgtggtcagcgatgaggacagcgag
gacgagctggaggagaaggaacagtccgaggggagcaggagtgaggatgagtga
DBGET
integrated database retrieval system
