Clupea harengus (Atlantic herring): 105901255
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Entry
105901255 CDS
T09045
Symbol
msh3
Name
(RefSeq) DNA mismatch repair protein Msh3
KO
K08736
DNA mismatch repair protein MSH3
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
105901255 (msh3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
char03400
]
105901255 (msh3)
DNA repair and recombination proteins [BR:
char03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
105901255 (msh3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
Motif
Other DBs
NCBI-GeneID:
105901255
NCBI-ProteinID:
XP_031426428
Ensembl:
ENSCHAG00000024088
UniProt:
A0A6P8FD68
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Position
7:complement(13134796..13190120)
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AA seq
1102 aa
AA seq
DB search
MHARFAVKSKPSKKKSNIQTSISKFFAEVNKKPEGDSANKSGINSNTLHLGVGVKKKHCE
DGVESPGKRAKLSHDGEFENMDTDATFSDSIKEPRPPTSRGSLSCSTLERLKGFSCPSTA
PRNGPEEKGPHTSCGGGLMDHSRESADSPTNIKRESPGEEEKEVEAIEQKQVRGFNFSQF
TKAGSGATKRSAPEVSAPNRRTKSIYTPLEQQFLEIKKQHKDTLLGVECGYKYRFFGEDA
EIAAKELNIFCHMDHNFMTASIPTHRLFVHVRRLVSSGYKVGVVKQTETSAIKASGANKS
SLFTRELTALYTKSTLVGEDVNPLLKLGDLEDAEDVVQDAPNNYLMCVYETWDKQSKELI
VGVVVVQPTIGDLMVDCFTDNTSRSELESRVLRIQPVEILVPFDLSEQTERLLRNIALAS
VQEDDRLRIERRESTQFEFGIAMNTVKDFYSDPSHQRQDGTEKGVYPYYNLERPVICCLG
PIIQYLTEFKLERVLLCCSSFKRLSSETDGMVLNATTLKNLEVLCNQTTGAVKGSLLWVL
DHTMSPFGKRLMKKWVAQPLKSVQEIRDRHDAVAEILSSDSSVLPSIRSLLNRLPDLERG
ICSIYHKKCSTQEFYLISSTLARLAVELQTLAPLAQAQLHSSLLQSLLLSLPQLLAPARD
FLRVLNENAAKKGDKTALFSDLTDFPLIRERKGEIQAALLEIQEHRREVRLIMRNPSLDY
VTVSGQEFLIEVKNSMSATVPGDWIKINSTKVVGRYHTPFIVEKHRQLLRLREQLVIDCG
REWINFLHLFGEHYYILKKAVCHLATVDCLFSLAQVAKENNYCRPEVLEVERQIVIQEGR
HPVIDVLLGEQDQYVPNDTQLQGEGKRAMIITGPNMGGKSSYIRQVALITIMAQLGSFVP
AQEASIGVVDGIYTRMGASDNISRGRSTFMEELVEASEILSRATSRSLVILDELGRGTST
HDGIAIAYATLEFFIKNVRSLTLFVTHYPPLCELERVYPEHVGNYHMSFLLNEPDTRDEE
GEVQPQFITFLYQLTEGAAGRSYGLNVARLAAIPEPILRTAALKSKELEALVDARRRSVK
LLSDIWNITDKEILAEWIQSNI
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgcatgcaaggttcgctgtgaagtctaaaccaagtaagaaaaagtctaacatacagacg
tccatcagtaaattctttgctgaagtcaataagaaaccagaaggcgacagtgcaaataaa
tctgggattaattcgaatactcttcaccttggggtgggagtgaagaaaaaacactgtgaa
gatggagtggaatccccggggaagcgagccaaactgtcccatgatggagagtttgaaaac
atggacactgatgccactttcagtgacagtatcaaagagccaagacctccgacgtccaga
ggtagcctttcgtgctccaccctggaaagactgaaaggcttcagttgtcccagcacagcg
ccgagaaatgggccagaggaaaaagggccacatacttcatgtggagggggcctcatggac
cacagcagagaatcagcagacagccccacaaacattaaaagagagagcccaggggaggag
gagaaggaggtggaggccattgagcaaaaacaggtccggggattcaacttcagtcagttc
accaaggcaggtagcggtgccaccaagaggagtgcccctgaagtgagtgcccccaacagg
agaaccaagagcatctacacccccctggagcagcagtttctggagatcaaaaaacagcac
aaagacactctccttggtgtggagtgtggctacaagtacaggttctttggagaggatgca
gagattgctgccaaggagctgaacattttctgtcatatggatcacaacttcatgactgcc
agcatccccacccatcggctgtttgtacacgtccgtcgcctggtctccagcggatacaag
gtgggtgtggtgaaacagaccgagacctctgccatcaaagcgtcaggtgccaataagagc
tccctcttcacccgtgagctgactgccctctacacaaagtccacgttggtgggggaggat
gtaaatcctcttctgaagctgggagacttggaggatgctgaggatgtggtgcaggatgcc
cccaacaactacctcatgtgcgtgtatgagacctgggacaagcagtcgaaggagctcatt
gtgggtgtcgtggtggtccagcctaccattggagacctgatggtggactgctttacagac
aacacgtcccgctccgagctagagtccagagtgctgcggatccagccagtggagatcctg
gtgccctttgacctctcagagcagacggagaggctcctacgcaacatcgcccttgccagt
gtgcaggaggacgaccgtctacgcattgaacggcgtgagagcacccagtttgagtttggc
atagccatgaacacagtgaaggacttttactcagacccatctcatcaaaggcaggatgga
acggaaaagggagtttatccatattacaacctggaacgacccgtcatttgttgcctgggt
cccatcatccagtacctgacggagtttaagctggaacgtgtcctgctctgctgcagctcc
ttcaagcggctctcgtccgagacggacggcatggtcctcaatgccaccaccctgaagaac
ctggaggtgctctgcaaccagactacaggtgctgtgaaggggagtctgctgtgggttctt
gaccacactatgtcaccgttcgggaagaggctgatgaagaaatgggtggcacagcccctt
aaatcagttcaagagatccgtgaccggcacgatgccgtggctgaaatcctctcctccgac
tccagcgtcctgccctccatcaggtccctgctcaaccgcctgcctgacctggagaggggc
atctgcagcatctaccacaaaaagtgctccacgcaggagttctacctcatcagcagcacg
ctggcacgtctggccgtggagctccagaccctggctccgctagcccaggcccagctccac
tccagcctgctccagagcctcctgctgagcctgccccagctgctggcccctgccagagac
ttcctcagggtgctcaacgagaacgccgccaagaaaggggacaagacggcgcttttttcc
gacctgactgactttccactgatccgcgagaggaaaggggagattcaggcggcactgctg
gagatccaggagcatcggcgagaagtccgccttattatgaggaatccctctctggattat
gtcactgtgtctggacaggagttcctgattgaggtgaagaactccatgtcagctacagtg
ccaggcgactggataaaaatcaacagcacaaaggtcgtgggacgctaccacactcccttc
atcgtggagaagcaccgccagctcctgcggctcagagagcagctggttattgactgcggc
cgcgagtggatcaactttctgcatttgtttggggagcactactacatcctgaagaaagcc
gtgtgtcacctagcaaccgttgactgcctcttctcattggcgcaggttgctaaagaaaac
aattactgcaggcccgaggtgctggaagttgagcgtcagattgtgatccaagagggccgg
cacccagtaattgatgtcctgctgggcgaacaggatcagtacgtgcccaacgacacgcag
ctgcagggcgagggcaagcgagccatgatcatcacaggacccaacatgggcgggaagagc
tcctacattcgccaagtggccctcatcaccattatggcccagcttggctccttcgttcct
gcccaggaggcctccataggggtcgtggatggcatctacaccaggatgggggcctccgac
aacatctcgagaggtcgtagtactttcatggaggagcttgtggaggcgtccgagattttg
tcccgggcaacgtctcgctccctggtcatcctggacgagctgggccgtggcaccagcaca
cacgatggcattgctatagcctatgccaccttggagttcttcattaaaaacgtgaggtcc
ttaactttgtttgtgacccactaccctcctctgtgtgagctggagagagtttacccagaa
catgtgggaaactaccacatgtctttcctcctcaacgaacccgacaccagagatgaagag
ggggaggtgcaaccccagttcatcactttcctctatcagctgacggagggagccgccggc
cggagctatgggttgaacgtggcacgcctggccgccatcccagagcccatcctcaggacc
gccgcgctcaagtccaaggagctggaagcactcgtcgatgccaggaggaggagtgtgaag
ctgttatcagacatctggaacatcactgataaagaaatattagctgaatggatccagtca
aacatttga
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